View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_35 (Length: 368)
Name: NF9661A_low_35
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_35 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 2018 - 2136
Alignment:
| Q |
161 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattgtttcttaaaaggtttttggtacgaata |
260 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
2018 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctactataggtgttttggttggttttaattgtttttttaaaggtttttggtacaaata |
2117 |
T |
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| Q |
261 |
gcatatgataggtgtttag |
279 |
Q |
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||||||||||||||||||| |
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| T |
2118 |
gcatatgataggtgtttag |
2136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 2252 - 2335
Alignment:
| Q |
275 |
tttagtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactatatatgttctttttgtttttcaggtctatg |
358 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
2252 |
tttagtggtgtcgtgatgtaggagatgtaagggttttctgtgcgtattttactatatatgttctttttgttttccaggtctatg |
2335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 14279519 - 14279400
Alignment:
| Q |
161 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattg-tttcttaaaaggtttttggtacgaat |
259 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||| |
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| T |
14279519 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctagtataggtgttttggtcggttttaattgttttttttaaaggtttttgatacgaat |
14279420 |
T |
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| Q |
260 |
agcatatgataggtgtttag |
279 |
Q |
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|||||||||||| ||||||| |
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| T |
14279419 |
agcatatgatagctgtttag |
14279400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 14279281 - 14279230
Alignment:
| Q |
278 |
agtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactat |
329 |
Q |
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||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
14279281 |
agtggtgtgttgatgtatgagatgtaagggttttctgtgcgtattttactat |
14279230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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