View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_40 (Length: 356)
Name: NF9661A_low_40
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 10142090 - 10141751
Alignment:
| Q |
17 |
acatcattgaagcactgcgtaaagaaatcagccagactgtgatggtcactgtgaagaaggtaccagcaaacaccaaagcaccagaaacgtctcgaggatg |
116 |
Q |
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| T |
10142090 |
acatcattgaagcactgcgtaaagaaatcggccagactgtgatggtcaatgtgaagaaggtaccagccaacaccaaagcaccagaaacgtctcgaggatg |
10141991 |
T |
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| Q |
117 |
ggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgt |
216 |
Q |
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| T |
10141990 |
ggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaattaaaagggttaagaatcatgcacctgattctgattctggttgcttgt |
10141891 |
T |
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| Q |
217 |
gatttgtaaatgaaacaaaacaaatgtatgaataagaataaag--ttgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaa |
314 |
Q |
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| T |
10141890 |
gatttgtaaatgacacaaaacaaatgtatgaataagaataaagctgtgtgtcaaacttggacagtacttgaactttgtccttttgttttaaaccaaacaa |
10141791 |
T |
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| Q |
315 |
tgcttgtaagatgttacttgtattccatcttccctatcat |
354 |
Q |
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| T |
10141790 |
tgcttgtaagatgttacttgtattccatcttccctatcat |
10141751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 10135288 - 10135316
Alignment:
| Q |
261 |
tgtgtcaaacttggacagtacttgaactt |
289 |
Q |
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| T |
10135288 |
tgtgtcaaacttggacagtacttgaactt |
10135316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 40685042 - 40685101
Alignment:
| Q |
109 |
cgaggatgggctagagtaagcttcttctttgggaacttgttcgaaaggttcttgacttaa |
168 |
Q |
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| T |
40685042 |
cgaggatgggctaaaactagcttcttctttggtaacttgttggaaaggttcttggcttaa |
40685101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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