View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_41 (Length: 354)
Name: NF9661A_low_41
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 11530632 - 11530461
Alignment:
| Q |
6 |
gtttggtgttgtaggagtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtg |
105 |
Q |
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| T |
11530632 |
gtttggtgttgtaggagtttgtcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtg |
11530533 |
T |
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| Q |
106 |
tattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
177 |
Q |
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| T |
11530532 |
tattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11530461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 11556129 - 11555958
Alignment:
| Q |
6 |
gtttggtgttgtaggagtttatcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtg |
105 |
Q |
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| T |
11556129 |
gtttggtgttgtaggagtttgtcgtgttttattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtg |
11556030 |
T |
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| Q |
106 |
tattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
177 |
Q |
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| T |
11556029 |
tattggaggaaaaaatgttccggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 11555891 - 11555800
Alignment:
| Q |
261 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtccatctcattgttct |
352 |
Q |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttct |
11555800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 11530213 - 11530154
Alignment:
| Q |
293 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtccatctcattgttct |
352 |
Q |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttct |
11530154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 11556559 - 11556521
Alignment:
| Q |
43 |
tctcgattaaatcctcatacaaggtgttggaatgtttgt |
81 |
Q |
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| T |
11556559 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
11556521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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