View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_43 (Length: 352)

Name: NF9661A_low_43
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_43
NF9661A_low_43
[»] chr6 (31 HSPs)
chr6 (7-177)||(15576518-15576688)
chr6 (177-327)||(5004061-5004217)
chr6 (177-327)||(25506450-25506606)
chr6 (177-318)||(13825703-13825850)
chr6 (176-342)||(5994698-5994871)
chr6 (177-331)||(25550295-25550455)
chr6 (177-327)||(30824438-30824594)
chr6 (179-344)||(25991852-25992023)
chr6 (176-346)||(33298084-33298259)
chr6 (177-327)||(23925335-23925492)
chr6 (177-327)||(11279837-11279993)
chr6 (177-327)||(35091585-35091741)
chr6 (176-285)||(15391568-15391677)
chr6 (39-173)||(15574462-15574599)
chr6 (175-279)||(13490191-13490295)
chr6 (177-229)||(5489132-5489184)
chr6 (7-111)||(16526916-16527021)
chr6 (9-80)||(12972811-12972883)
chr6 (176-238)||(11053701-11053764)
chr6 (177-238)||(30114444-30114505)
chr6 (290-344)||(25711862-25711916)
chr6 (236-278)||(26526666-26526708)
chr6 (286-346)||(5489055-5489115)
chr6 (287-327)||(12667456-12667496)
chr6 (287-327)||(28702806-28702846)
chr6 (119-165)||(17860886-17860932)
chr6 (287-344)||(25690879-25690936)
chr6 (287-344)||(25697672-25697729)
chr6 (287-319)||(1625001-1625033)
chr6 (287-327)||(18960917-18960957)
chr6 (287-327)||(20459375-20459415)
[»] chr7 (18 HSPs)
chr7 (176-346)||(10439936-10440112)
chr7 (177-327)||(12978455-12978611)
chr7 (177-327)||(18304301-18304457)
chr7 (176-327)||(4952306-4952463)
chr7 (176-327)||(13831499-13831656)
chr7 (176-327)||(13839530-13839687)
chr7 (7-173)||(21471316-21471486)
chr7 (177-273)||(30244775-30244871)
chr7 (176-238)||(4941581-4941643)
chr7 (185-279)||(30255420-30255514)
chr7 (177-279)||(30245568-30245670)
chr7 (176-271)||(21662993-21663089)
chr7 (21-173)||(5721920-5722077)
chr7 (14-92)||(7955796-7955875)
chr7 (287-325)||(43906204-43906242)
chr7 (287-328)||(39866422-39866463)
chr7 (39-88)||(1074076-1074125)
chr7 (41-93)||(16166702-16166754)
[»] chr4 (16 HSPs)
chr4 (175-346)||(52295602-52295780)
chr4 (177-346)||(27343581-27343756)
chr4 (176-346)||(12996475-12996651)
chr4 (176-327)||(8094191-8094348)
chr4 (177-327)||(8102997-8103153)
chr4 (177-327)||(4523589-4523745)
chr4 (177-272)||(21532274-21532369)
chr4 (177-272)||(12428448-12428543)
chr4 (177-250)||(10638328-10638400)
chr4 (176-271)||(33188765-33188859)
chr4 (177-278)||(3424331-3424432)
chr4 (232-279)||(12402907-12402954)
chr4 (39-105)||(15787861-15787927)
chr4 (286-346)||(10638421-10638481)
chr4 (287-327)||(19737928-19737968)
chr4 (287-342)||(10814330-10814385)
[»] scaffold0156 (1 HSPs)
scaffold0156 (177-346)||(35246-35421)
[»] chr8 (25 HSPs)
chr8 (177-318)||(17973565-17973712)
chr8 (177-327)||(30938282-30938438)
chr8 (176-327)||(39837471-39837628)
chr8 (177-327)||(25579721-25579877)
chr8 (177-310)||(4839708-4839847)
chr8 (176-346)||(26873493-26873670)
chr8 (177-327)||(1406982-1407138)
chr8 (177-346)||(26875943-26876119)
chr8 (177-327)||(39845514-39845670)
chr8 (177-316)||(17683716-17683861)
chr8 (176-316)||(17664560-17664706)
chr8 (11-92)||(16052707-16052789)
chr8 (8-173)||(22894959-22895128)
chr8 (176-279)||(4582203-4582306)
chr8 (176-238)||(6670710-6670772)
chr8 (11-112)||(28901768-28901869)
chr8 (177-234)||(6663042-6663099)
chr8 (177-234)||(6743444-6743501)
chr8 (287-325)||(15061257-15061295)
chr8 (287-331)||(12844052-12844097)
chr8 (287-320)||(22156912-22156945)
chr8 (287-320)||(32006839-32006872)
chr8 (287-319)||(20028329-20028361)
chr8 (287-331)||(25766187-25766231)
chr8 (287-331)||(25795681-25795725)
[»] chr3 (32 HSPs)
chr3 (176-350)||(14538490-14538671)
chr3 (177-332)||(50824352-50824513)
chr3 (177-332)||(50851347-50851508)
chr3 (176-346)||(27341224-27341401)
chr3 (176-327)||(41006555-41006712)
chr3 (176-327)||(41015335-41015492)
chr3 (176-327)||(8154553-8154710)
chr3 (176-327)||(9525343-9525500)
chr3 (177-325)||(9555019-9555173)
chr3 (177-346)||(2211239-2211414)
chr3 (177-272)||(28470187-28470282)
chr3 (176-271)||(17933654-17933749)
chr3 (176-285)||(17919198-17919307)
chr3 (177-241)||(17628265-17628329)
chr3 (177-276)||(21186747-21186846)
chr3 (179-285)||(43470510-43470615)
chr3 (10-173)||(11520659-11520826)
chr3 (176-270)||(16816176-16816269)
chr3 (181-279)||(18349560-18349658)
chr3 (176-279)||(8197659-8197762)
chr3 (177-275)||(30443-30541)
chr3 (177-276)||(18039011-18039110)
chr3 (287-345)||(13509315-13509373)
chr3 (287-325)||(14881238-14881276)
chr3 (287-327)||(13105558-13105598)
chr3 (287-327)||(13111706-13111746)
chr3 (287-327)||(48060645-48060685)
chr3 (14-92)||(5632921-5633000)
chr3 (287-325)||(14893069-14893107)
chr3 (176-204)||(6958978-6959006)
chr3 (287-331)||(9523684-9523728)
chr3 (287-319)||(14740071-14740103)
[»] scaffold0497 (1 HSPs)
scaffold0497 (177-346)||(10993-11167)
[»] chr5 (29 HSPs)
chr5 (176-327)||(24956755-24956912)
chr5 (176-327)||(24965218-24965375)
chr5 (177-346)||(29186168-29186343)
chr5 (176-344)||(20372805-20372979)
chr5 (176-344)||(23349968-23350142)
chr5 (177-344)||(20398527-20398700)
chr5 (177-327)||(43597955-43598111)
chr5 (177-327)||(43603447-43603603)
chr5 (177-327)||(43608939-43609095)
chr5 (174-327)||(1728068-1728227)
chr5 (176-327)||(28852549-28852706)
chr5 (177-327)||(28843940-28844096)
chr5 (177-346)||(31410890-31411065)
chr5 (177-346)||(31421789-31421965)
chr5 (177-285)||(19223555-19223663)
chr5 (7-92)||(24841367-24841453)
chr5 (7-173)||(17027056-17027225)
chr5 (11-166)||(22754482-22754641)
chr5 (11-102)||(11274779-11274871)
chr5 (180-279)||(41099739-41099838)
chr5 (287-344)||(40014981-40015040)
chr5 (19-105)||(19331160-19331247)
chr5 (287-327)||(36454733-36454773)
chr5 (290-327)||(20099569-20099606)
chr5 (177-226)||(21929236-21929285)
chr5 (287-320)||(37048448-37048481)
chr5 (287-327)||(15956900-15956940)
chr5 (11-94)||(23125370-23125454)
chr5 (287-327)||(36448355-36448395)
[»] chr2 (34 HSPs)
chr2 (176-327)||(15944466-15944623)
chr2 (176-327)||(35138592-35138749)
chr2 (176-327)||(35146928-35147085)
chr2 (176-327)||(41233753-41233910)
chr2 (177-327)||(14582925-14583081)
chr2 (177-327)||(15952981-15953137)
chr2 (177-327)||(38168266-38168422)
chr2 (177-282)||(17687358-17687463)
chr2 (176-327)||(42565838-42565995)
chr2 (177-327)||(42574462-42574618)
chr2 (205-346)||(35037884-35038031)
chr2 (176-285)||(20621517-20621626)
chr2 (177-285)||(25483601-25483709)
chr2 (177-285)||(25491207-25491315)
chr2 (177-272)||(20372283-20372378)
chr2 (177-285)||(44372705-44372813)
chr2 (177-285)||(44388616-44388724)
chr2 (177-279)||(27606608-27606709)
chr2 (177-279)||(42249418-42249520)
chr2 (177-284)||(35303737-35303844)
chr2 (177-279)||(24285696-24285798)
chr2 (177-279)||(34070567-34070669)
chr2 (179-279)||(26903296-26903396)
chr2 (8-94)||(22389179-22389265)
chr2 (176-238)||(24292371-24292433)
chr2 (9-75)||(39730111-39730178)
chr2 (300-350)||(17687307-17687357)
chr2 (177-238)||(21322814-21322875)
chr2 (287-327)||(18208-18248)
chr2 (287-327)||(36735439-36735479)
chr2 (177-227)||(20917520-20917570)
chr2 (287-320)||(20279260-20279293)
chr2 (144-177)||(31449477-31449510)
chr2 (287-344)||(11873790-11873849)
[»] chr1 (26 HSPs)
chr1 (176-327)||(31548522-31548679)
chr1 (177-327)||(31539954-31540110)
chr1 (177-327)||(35103973-35104129)
chr1 (176-327)||(3432799-3432956)
chr1 (177-346)||(32137644-32137819)
chr1 (177-350)||(41746578-41746758)
chr1 (176-279)||(29221451-29221554)
chr1 (14-102)||(23223131-23223220)
chr1 (177-279)||(21498861-21498963)
chr1 (177-285)||(44320149-44320257)
chr1 (179-277)||(51058353-51058450)
chr1 (287-346)||(13450139-13450198)
chr1 (179-285)||(28457556-28457664)
chr1 (17-93)||(31313020-31313097)
chr1 (287-327)||(47108478-47108518)
chr1 (41-92)||(27754786-27754837)
chr1 (177-211)||(20314058-20314092)
chr1 (41-95)||(31313107-31313161)
chr1 (177-279)||(52100017-52100119)
chr1 (287-327)||(1961742-1961782)
chr1 (10-65)||(14397286-14397342)
chr1 (287-327)||(18098481-18098521)
chr1 (287-327)||(20429459-20429499)
chr1 (287-331)||(20518385-20518429)
chr1 (287-319)||(39454485-39454517)
chr1 (287-327)||(44832475-44832515)
[»] scaffold0111 (1 HSPs)
scaffold0111 (177-350)||(33035-33214)
[»] scaffold0016 (1 HSPs)
scaffold0016 (176-342)||(23463-23636)
[»] scaffold0173 (1 HSPs)
scaffold0173 (176-342)||(823-995)
[»] scaffold0002 (1 HSPs)
scaffold0002 (177-318)||(121228-121375)
[»] scaffold0083 (1 HSPs)
scaffold0083 (177-327)||(15813-15970)
[»] scaffold0632 (1 HSPs)
scaffold0632 (177-346)||(4390-4566)
[»] scaffold0209 (1 HSPs)
scaffold0209 (177-319)||(1-149)
[»] scaffold0039 (1 HSPs)
scaffold0039 (177-285)||(40790-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (177-272)||(139-234)
[»] scaffold0222 (1 HSPs)
scaffold0222 (177-285)||(20439-20547)
[»] scaffold0170 (1 HSPs)
scaffold0170 (177-273)||(7159-7255)
[»] scaffold0015 (1 HSPs)
scaffold0015 (175-279)||(192526-192630)
[»] scaffold0863 (1 HSPs)
scaffold0863 (176-279)||(335-438)
[»] scaffold0044 (2 HSPs)
scaffold0044 (176-279)||(65501-65604)
scaffold0044 (176-279)||(81749-81852)
[»] scaffold0048 (1 HSPs)
scaffold0048 (177-249)||(7622-7694)
[»] scaffold0389 (1 HSPs)
scaffold0389 (176-279)||(415-518)
[»] scaffold0991 (1 HSPs)
scaffold0991 (177-275)||(340-438)
[»] scaffold1487 (1 HSPs)
scaffold1487 (184-223)||(762-801)
[»] scaffold0514 (1 HSPs)
scaffold0514 (176-238)||(10912-10974)
[»] scaffold0990 (1 HSPs)
scaffold0990 (60-173)||(3009-3127)
[»] scaffold0484 (1 HSPs)
scaffold0484 (177-226)||(11457-11507)
[»] scaffold0323 (1 HSPs)
scaffold0323 (294-344)||(17619-17669)
[»] scaffold0167 (1 HSPs)
scaffold0167 (287-325)||(8084-8122)
[»] scaffold0027 (2 HSPs)
scaffold0027 (176-210)||(65710-65744)
scaffold0027 (287-327)||(23688-23728)
[»] scaffold0458 (1 HSPs)
scaffold0458 (287-319)||(9201-9233)
[»] scaffold0206 (2 HSPs)
scaffold0206 (287-319)||(259-291)
scaffold0206 (287-319)||(9021-9053)
[»] scaffold0007 (1 HSPs)
scaffold0007 (177-235)||(61288-61347)
[»] scaffold0001 (1 HSPs)
scaffold0001 (287-331)||(4862-4906)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 15576518 - 15576688
Alignment:
Q  7 gggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccat 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15576518 gggctggtcaaggcatttgtcacactcagccatcatgtgattgtaccttactatgagattgaagcaattcgaaatagacattcaaggtctatatcaccat 15576617  T
Q  107 acacaccgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgggaaagtatgct 177  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15576618 acacactggaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgct 15576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 5004061 - 5004217
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 5004160  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  5004161 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 5004217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 25506606 - 25506450
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||       ||||||||||||||||||||||| |||||||||| ||||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagtcaggccctcttttctcttt 25506450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 13825703 - 13825850
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctct 318  Q
    ||| |||||      |||||||||||||||||||||||||||||||||    
T  13825803 agaggttactttgaagtacctcatttttgattccgagtcgggccctct 13825850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 342
Target Start/End: Original strand, 5994698 - 5994871
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||    
T  5994698 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggca 5994797  T
Q  276 gagaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttattt 342  Q
     ||| |||||      |||||||| |||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  5994798 aagaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctttgttttctttttattt 5994871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 331
Target Start/End: Original strand, 25550295 - 25550455
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcag 25550394  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    ||| |||||      ||||||||||||| |||||||||||| || ||||  ||||||||||    
T  25550395 agaggttactttgaagtacctcattttttattccgagtcggaccatcttctctctttattt 25550455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 30824594 - 30824438
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  30824494 agaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 30824438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 179 - 344
Target Start/End: Original strand, 25991852 - 25992023
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 278  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  279 aagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    | |||||      ||||||||||||| |||| ||||||| |||||||  ||||||||||| | |||||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccctcttctctctttatttactctttatttca 25992023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 33298084 - 33298259
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  33298084 ctgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 33298183  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
     || ||||||      ||||||||||||| ||||||||| || |||| ||  ||||||||||  |||||||||||||    
T  33298184 aag-agttactttgaagtacctcattttttattccgagtaggacccttttctctctttattttatttttatttcagt 33298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 23925335 - 23925492
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||   |||||||||||| ||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  277 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      |||||||| |||||||||||||||| ||||||||| |||||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccctcttccctcttt 23925492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 11279837 - 11279993
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 11279993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 35091741 - 35091585
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||     
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 35091642  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      ||||||||||||| ||| ||| |||| |||||||| ||||||    
T  35091641 ggaggttactttgaagtacctcattttttatttcgaatcggaccctcttttctcttt 35091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 15391677 - 15391568
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||    
T  15391677 ctgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgaca 15391578  T
Q  276 gagaagttac 285  Q
     ||| |||||    
T  15391577 aagaggttac 15391568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 15574599 - 15574462
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacaccga---aggcattttcaaggttatca 135  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||| |||||||  ||||||||  |   |||  ||||||||||||| |    
T  15574599 tcatgtgattgtatcttgctatgagattgaagcaattatacatagacattcaaggtttatatcattatacacacatatagaggacttttcaaggttataa 15574500  T
Q  136 cgtggttgaggttaaggtggggtatatttgggaaagta 173  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  15574499 cgtggctgaggttaaggtgggatatatttgggaaagta 15574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 13490191 - 13490295
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc 274  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||  |||||||||||||  ||||| || |||| |||||    
T  13490191 gctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaatctcggc 13490290  T
Q  275 agaga 279  Q
    |||||    
T  13490291 agaga 13490295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 5489184 - 5489132
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 16527021 - 16526916
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||||||||||| ||| | |||||||| |||| ||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||||| ||||||| ||    
T  16527021 gggctggtcaagacatatttcacactccagtcgtcatgtgattgtacctttctataacattaaagcaattctaaacagacattcaaggtatatatcatca 16526922  T
Q  106 tacaca 111  Q
     |||||    
T  16526921 cacaca 16526916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 12972811 - 12972883
Alignment:
Q  9 gctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaa 80  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12972811 gctggtcaaggcatttgccacactccaatcatcatgtgattgtaccttgctatgagattgaatcaattctaaa 12972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 11053701 - 11053764
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  11053701 ctgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa 11053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 30114444 - 30114505
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  30114444 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 30114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 25711862 - 25711916
Alignment:
Q  290 ctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    ||||||||||||||||||||||||||||||  ||||||||||  | |||||||||    
T  25711862 ctcatttttgattccgagtcgggccctcttctctctttattttctctttatttca 25711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 26526708 - 26526666
Alignment:
Q  236 aaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 278  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagag 26526666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 5489115 - 5489055
Alignment:
Q  286 gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    |||| |||||||||||||| |||||| |||| || |||||||||||  |||||||||||||    
T  5489115 gtacttcatttttgattccaagtcggaccctgttccctctttattttctttttatttcagt 5489055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 12667496 - 12667456
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  12667496 tacctcatttttgattccgagtcggaccctcttttctcttt 12667456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 28702846 - 28702806
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  28702846 tacctcatttttgattccgattcgggccctcttttctcttt 28702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 17860886 - 17860932
Alignment:
Q  119 cattttcaaggttatcacgtggttgaggttaaggtggggtatatttg 165  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||    
T  17860886 cattttcaaggttataacgtgactgaggttaaggtgggatatatttg 17860932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 25690879 - 25690936
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||  | |||||||||    
T  25690879 tacctcattttttattccgagtcggaccctcttctctctttattttctctttatttca 25690936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 25697672 - 25697729
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||  | |||||||||    
T  25697672 tacctcattttttattccgagtcggaccctcttctctctttattttctctttatttca 25697729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 1625001 - 1625033
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  1625001 tacctcatatttgattccgagtcgggccctctt 1625033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 18960957 - 18960917
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  18960957 tacctcattttttattccgagtcggaccctcttttctcttt 18960917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 20459415 - 20459375
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  20459415 tacctcattttttattccgaatcgggccctcttttctcttt 20459375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 10439936 - 10440112
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10439936 ctgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 10440035  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    |||| |||||      ||||||||||||| |||||||||| | |||||||| ||||||||||  |||||||||||||    
T  10440036 gagaggttactttaaagtacctcattttttattccgagtcagaccctcttttctctttattttctttttatttcagt 10440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 12978455 - 12978611
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 12978611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 18304457 - 18304301
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| ||| |||||||| |||||||| ||||||    
T  18304357 agaggttactttgaagtacctcattttttatttcgagtcggaccctcttttctcttt 18304301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 4952463 - 4952306
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  4952463 ctgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 4952364  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||||||||||    
T  4952363 aagaggttactttgaagtacctcattttttattccgagtcggaccctctttcctcttt 4952306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 13831499 - 13831656
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  13831499 ctgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13831598  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  13831599 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 13831656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 13839530 - 13839687
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  13839530 ctgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13839629  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  13839630 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 13839687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 21471486 - 21471316
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  21471486 gggctggtcaaggcatttgccatactccagtcgtcatgtgattgtaccttgctatgagattgaagcaattctaaatagacattcaatgtatatatcatca 21471387  T
Q  106 tacacac---cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgggaaagta 173  Q
     ||||||   | ||||  ||||||||||||| |||||  | |||||||| | || ||||||| ||||||||    
T  21471386 cacacacatacaaaggacttttcaaggttataacgtgactaaggttaagttaggatatattttggaaagta 21471316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 30244775 - 30244871
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcgg 273  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||  || ||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttcgg 30244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 4941643 - 4941581
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941643 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 30255420 - 30255514
Alignment:
Q  185 cccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 279  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||||| ||||||  || ||||||||||||||    
T  30255420 cccaaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggcagaga 30255514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 30245568 - 30245670
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||||| ||||||  || |||||||| ||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggaag 30245667  T
Q  277 aga 279  Q
    |||    
T  30245668 aga 30245670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 21663089 - 21662993
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtat-ttttaaagtcgggaattttcgtcgtttcatacgaaatttc 271  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| |||||||| || || | |||||||||| | ||||||||||    
T  21663089 ctgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttc 21662993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 5722077 - 5721920
Alignment:
Q  21 atttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacaccga---a 116  Q
    ||||||||||||| |||  |||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||   |||| |||| ||||||  |   |    
T  5722077 atttgtcacactccagtagtcatttgattgtatcttgctatgagattgaagcaattctaaataggcattcaaggcacatattaccagacacacatataga 5721978  T
Q  117 ggcattttcaaggttatcacgtggttgaggtt-aaggtggggtatatttgggaaagta 173  Q
    ||  ||||||||||||| |||||| | ||||| |||||||| |||||||  |||||||    
T  5721977 ggttttttcaaggttataacgtggcttaggttaaaggtgggatatattttagaaagta 5721920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 7955875 - 7955796
Alignment:
Q  14 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||||||||| | ||||| ||||||||||||||||||||||  ||||||| | ||||||||| ||| ||||| |||||    
T  7955875 tcaaggcatttgccccactccagtcatcatgtgattgtaccttgttatgagactaaagcaattccaaacagacactcaag 7955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 43906204 - 43906242
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctct 325  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  43906204 tacctcatttttgattccgagtcgggccctcttttctct 43906242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 39866422 - 39866463
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttta 328  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  39866422 tacctcatttttggttccgagtcgggccctcttttctcttta 39866463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 1074125 - 1074076
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacatt 88  Q
    |||||||||||||||||  ||||||||||||||||||  ||| |||||||    
T  1074125 tcatgtgattgtaccttgttatgagattgaagcaatttcaaacagacatt 1074076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 16166754 - 16166702
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaagg 93  Q
    ||||||||||||| || ||| | |||||| |||||||||| ||||||||||||    
T  16166754 atgtgattgtaccatattataaaattgaaacaattctaaacagacattcaagg 16166702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 175 - 346
Target Start/End: Original strand, 52295602 - 52295780
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  52295602 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggc 52295701  T
Q  275 agagaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    |||||  ||||      |||||||| ||||||||||||||||||||||||||  ||||||||||  |||||||||||||    
T  52295702 agagagattactttgaagtacctcattttttgattccgagtcgggccctcttctctctttattttctttttatttcagt 52295780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 27343756 - 27343581
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||  ||||||||||  |||||||||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttattttctttttatttcagt 27343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 176 - 346
Target Start/End: Original strand, 12996475 - 12996651
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |    
T  12996475 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggta 12996574  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    |||| |||||      ||||||||||||| |||||||||| | |||||||  |||||| |||  |||||||||||||    
T  12996575 gagaggttactttgaagtacctcattttttattccgagtcagtccctcttctctctttgttttctttttatttcagt 12996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 8094348 - 8094191
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8094348 ctgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 8094249  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  8094248 aagaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 8094191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 8103153 - 8102997
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      |||||||||||||||||||||||||| | |||||| ||||||    
T  8103053 agaggttactttgaagtacctcatttttgattccgagtcggactctcttttctcttt 8102997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 4523745 - 4523589
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 4523589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 21532369 - 21532274
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 272  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcg 21532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 12428543 - 12428448
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 272  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | |||||||||  ||||| |||||||||||    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcg 12428448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaatttt 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 33188765 - 33188859
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttc 271  Q
    |||||||||||||||||||||| |||||| |||||| ||| || ||||||| ||||||||||||  | ||||||||||||||||| ||||||||||    
T  33188765 ctgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttc 33188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 3424331 - 3424432
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||| || ||||||||| | |||||| |||||||| || ||| |||| |  |||  ||||||||| || |||||||||||||||    
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcggcag 3424430  T
Q  277 ag 278  Q
    ||    
T  3424431 ag 3424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 12402907 - 12402954
Alignment:
Q  232 ttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 279  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagaga 12402954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 15787861 - 15787927
Alignment:
Q  39 tcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||| |||||||||||| ||||||||||||| ||||| |||||||||||| || |||||||| ||||    
T  15787861 tcatttgattgtaccttgctatgagattgaatcaattttaaatagacatttaaagtctatattacca 15787927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 10638421 - 10638481
Alignment:
Q  286 gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||||||||||||| |||||||||||| ||||||   ||||||||||  |||||||||||||    
T  10638421 gtacctcattttttattccgagtcggaccctctcctctctttattttctttttatttcagt 10638481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 19737968 - 19737928
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  19737968 tacctcatttttgattccgagtcggaccctcttttctcttt 19737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 10814330 - 10814385
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 342  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||  |||||||||    
T  10814330 tacctcattttttattccgagtcagaccctcttccctctttattttctttttattt 10814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 35421 - 35246
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      ||||||||||||| ||||||||||||||||||||  || |||||||  |||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccgagtcgggccctcttcgctttttattttctttttatttcagt 35246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 17973565 - 17973712
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctct 318  Q
    ||| |||||      ||||||||||||| |||||||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattccgagtcgggccctct 17973712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 30938282 - 30938438
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 30938438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 39837628 - 39837471
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  39837628 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39837529  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  39837528 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 39837471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 25579877 - 25579721
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||  |||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattccgagtcgaaccctctttcctcttt 25579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 4839847 - 4839708
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 4839748  T
Q  277 agaagttac------gtacctcatttttgattccgagtcg 310  Q
    |||||||||      |||||||||||||||||||| ||||    
T  4839747 agaagttactttgaagtacctcatttttgattccgtgtcg 4839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 346
Target Start/End: Complemental strand, 26873670 - 26873493
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||| ||    
T  26873670 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgaca 26873571  T
Q  276 gagaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
     ||| |||||      |||||| | ||||||||||||||| ||||| ||||  ||||||||||  |||||||||||||    
T  26873570 aagaggttactttaaagtaccttattttttgattccgagtagggccgtcttctctctttattttctttttatttcagt 26873493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 1407138 - 1406982
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 1406982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 26876119 - 26875943
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||| ||     
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  277 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||       ||||||| ||||||||||||||| ||||| ||||  ||||||||||  |||||||||||||    
T  26876019 agaggttactttaaaatacctcattttttgattccgagtagggccatcttctctctttattttctttttatttcagt 26875943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 39845670 - 39845514
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||     
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39845571  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |  ||||||||| |||||||| ||||||    
T  39845570 agaggttactttgaagtacctcattttttaaaccgagtcggaccctcttttctcttt 39845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 17683861 - 17683716
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||     
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccct 316  Q
    |||||||||      ||||||||||||| |||||||||||| ||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagtcggaccct 17683716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 176 - 316
Target Start/End: Complemental strand, 17664706 - 17664560
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| | ||    
T  17664706 ctgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgaca 17664607  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccct 316  Q
     |||||||||      ||||||||||||| |||||||||||| ||||    
T  17664606 aagaagttactttgaagtacctcattttttattccgagtcggaccct 17664560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 16052707 - 16052789
Alignment:
Q  11 tggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    ||||||||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  16052707 tggtcaaggcatttgccacacttcaatcgtcatgtgattgtaccttgctatgagattgaagcaattcgaaacagacattcaag 16052789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 22894959 - 22895128
Alignment:
Q  8 ggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccat 106  Q
    |||| ||||||||||||| ||||||| |||  || | |||||||||||| ||||||||||||||| |||||||| ||||||||| ||| |||||||  |     
T  22894959 ggctagtcaaggcatttgccacactccagttgtcgtatgattgtacctttctatgagattgaagccattctaaacagacattcagggtatatatcatgac 22895058  T
Q  107 acacac---cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgggaaagta 173  Q
    ||||||     ||||  ||||||  ||||| || |||||||||||||||| |  ||||||||||||||||    
T  22895059 acacacatataaaggtcttttcagagttataacctggttgaggttaaggttgaatatatttgggaaagta 22895128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 4582203 - 4582306
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||  |||||||||||||||||||||||| |||| |||||| ||| || |||||||  ||| ||| | |||| ||| | ||||||||||||||    
T  4582203 ctgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttcggca 4582302  T
Q  276 gaga 279  Q
    ||||    
T  4582303 gaga 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 6670710 - 6670772
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  6670710 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 6670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 28901768 - 28901869
Alignment:
Q  11 tggtcaaggcatttgtcacac-tcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccataca 109  Q
    ||||||||| ||||||||| | |  ||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||| || ||||| ||||||| || |||    
T  28901768 tggtcaaggaatttgtcactcgtttgtcgtcatgtgattgtatcttgctacgagattgaagc-attctaaatagacttttaaggtatatatcatcacaca 28901866  T
Q  110 cac 112  Q
    |||    
T  28901867 cac 28901869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 6663042 - 6663099
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 234  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6663042 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6663099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 6743444 - 6743501
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 234  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6743444 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 15061295 - 15061257
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctct 325  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  15061295 tacctcattttttattccgagtcgggccctcttttctct 15061257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 12844052 - 12844097
Alignment:
Q  287 tacctcat-ttttgattccgagtcgggccctctttcctctttattt 331  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  12844052 tacctcatattttggttccgagtcgggccctcttccctctttattt 12844097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 22156945 - 22156912
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt 320  Q
    ||||||||||||||||||||||||| ||||||||    
T  22156945 tacctcatttttgattccgagtcggaccctcttt 22156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 32006839 - 32006872
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt 320  Q
    |||||||||||| |||||||||||||||||||||    
T  32006839 tacctcattttttattccgagtcgggccctcttt 32006872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 20028361 - 20028329
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  20028361 tacctcatatttgattccgagtcgggccctctt 20028329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 25766187 - 25766231
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||    
T  25766187 tacctcattttttattccgagtcagaccctcttccctctttattt 25766231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 25795681 - 25795725
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    |||||||||||| |||||||||| | ||||||| |||||||||||    
T  25795681 tacctcattttttattccgagtcagaccctcttccctctttattt 25795725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 14538671 - 14538490
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc- 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||     
T  14538671 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 14538572  T
Q  275 agagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 350  Q
    | ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  |||||||||||||||||    
T  14538571 aaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttcagtgttt 14538490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 50824352 - 50824513
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50824451  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattta 332  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||  |||||| ||||    
T  50824452 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttcttta 50824513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 332
Target Start/End: Complemental strand, 50851508 - 50851347
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50851409  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttattta 332  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||  |||||| ||||    
T  50851408 agaggttactttgaagtacctcattttttattccgagtcggaccctcttctctctttcttta 50851347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 346
Target Start/End: Complemental strand, 27341401 - 27341224
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  27341401 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 27341302  T
Q  276 gagaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    || | |||||      |||||||| ||||| |||||||||| ||||||||| |||||||||||  ||| |||||||||    
T  27341301 gaaaggttactttgaagtacctcatttttttattccgagtcaggccctcttccctctttattttctttctatttcagt 27341224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 41006555 - 41006712
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41006555 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41006654  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41006655 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41006712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 41015335 - 41015492
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41015335 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41015434  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41015435 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41015492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 8154710 - 8154553
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  8154710 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 8154611  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  8154610 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 8154553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 9525500 - 9525343
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  9525500 ctgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggca 9525401  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    || | |||||       |||||||||||| ||||||||||||||||||||| ||||||    
T  9525400 gaaaggttactttaaaatacctcattttttattccgagtcgggccctcttttctcttt 9525343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 9555173 - 9555019
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctct 325  Q
    | | |||||       |||||||||||| ||||||||||||||||||||| ||||    
T  9555073 aaaggttactttaaaatacctcattttttattccgagtcgggccctcttttctct 9555019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 2211239 - 2211414
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||     
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  277 agaag------ttacgtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |      | |  |||||||||||| |||||||||| |||||||||  ||||||||||  |||||||||||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccctcttctctctttattttctttttatttcagt 2211414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 28470282 - 28470187
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 272  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcg 28470187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 17933654 - 17933749
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttc 271  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||    
T  17933654 ctgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttc 17933749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 17919198 - 17919307
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||  |||||||||  ||||| ||||||||||| |     
T  17919198 ctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcg 17919297  T
Q  276 gagaagttac 285  Q
    |||| |||||    
T  17919298 gagaggttac 17919307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 21186747 - 21186846
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||||||||||| |||||||| || |||||||||| |||||| |||||||||||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttcggcag 21186846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 43470615 - 43470510
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 278  Q
    ||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |||||||  |||||||| |||||||||||||||||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  279 aagttac 285  Q
    | |||||    
T  43470516 aggttac 43470510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 11520826 - 11520659
Alignment:
Q  10 ctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatac 108  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||||| ||||||||||||||||||| |||  ||||||||||||| |||||||  | ||    
T  11520826 ctggtcaaggcatttgccacactctagtcgtcatatgattgtaccttgctatgagattgaagcaattataagcagacattcaaggtatatatcataacac 11520727  T
Q  109 acaccga---aggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgggaaagta 173  Q
    |||   |   |||  ||||||||||||| |||||| |||||| |||||||| ||||||| ||||||||    
T  11520726 acagacatagaggacttttcaaggttataacgtggatgaggtaaaggtgggatatatttaggaaagta 11520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 16816269 - 16816176
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaattt 270  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||  ||||| |||||||||    
T  16816269 ctgtcataccc-aaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattt 16816176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 18349560 - 18349658
Alignment:
Q  181 ataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 279  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||| ||| | |||||||| | ||||||||||||||||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttcggcagaga 18349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 8197762 - 8197659
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| | || |||||||||||    
T  8197762 ctgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttcggca 8197663  T
Q  276 gaga 279  Q
    ||||    
T  8197662 gaga 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 30541 - 30443
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||  ||| ||| | |||||||| | ||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 30443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 18039011 - 18039110
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   |||| |||||| |||||||||| ||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttcagcag 18039110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 13509373 - 13509315
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcag 345  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||    
T  13509373 tacctcatttttgattccgaatcgggccctcttccctctttattttctttttatttcag 13509315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 14881276 - 14881238
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctct 325  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  14881276 tacctcatttttgattccgagtcgggccctcttttctct 14881238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 13105598 - 13105558
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  13105598 tacctcatttttgattccgagtcggaccctcttttctcttt 13105558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 13111746 - 13111706
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  13111746 tacctcatttttgattccgagtcggaccctcttttctcttt 13111706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 48060685 - 48060645
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  48060685 tacctcattttttattccgagtcgggccctcttttctcttt 48060645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 5632921 - 5633000
Alignment:
Q  14 tcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||| |||||||||||| ||||| | |||| ||| |||||| | || ||||||||||||||||||| | |||||||||    
T  5632921 tcaaggaatttgtcacactgcagtcgtaatgtaattataccttgcaattagattgaagcaattctaaacatacattcaag 5633000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 14893107 - 14893069
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctct 325  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  14893107 tacctcatttttgattccgagtcggcccctcttttctct 14893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 6959006 - 6958978
Alignment:
Q  176 ctgtcataccccaaattttgaccactttt 204  Q
    |||||||||||||||||||||||||||||    
T  6959006 ctgtcataccccaaattttgaccactttt 6958978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 9523728 - 9523684
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||    
T  9523728 tacctcatttttggtttcgagtcgggccctcttctctctttattt 9523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 14740103 - 14740071
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  14740103 tacctcatatttgattccgagtcgggccctctt 14740071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 10993 - 11167
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      |||||||| |||||||||||| ||||||||||||  ||||||||||  |||||||||||||    
T  11093 agaggttactttgaagtacctca-ttttgattccgaatcgggccctcttctctctttattttctttttatttcagt 11167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 24956912 - 24956755
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24956912 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24956813  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  24956812 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 24956755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 24965375 - 24965218
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24965375 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24965276  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  24965275 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 24965218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 29186343 - 29186168
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      || |||||||||| |||||||||||| |||| ||  ||||||||||  |||||||||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggacccttttctctctttattttatttttatttcagt 29186168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 20372979 - 20372805
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  20372979 ctgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20372880  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    |||| |||||      ||||||||||||| |||||||||||  |||||||  ||| ||||||  | |||||||||    
T  20372879 gagaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttca 20372805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 23350142 - 23349968
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  23350142 ctgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggca 23350043  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
     ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  | |||||||||    
T  23350042 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttca 23349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 20398700 - 20398527
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  20398700 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20398601  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    ||| |||||      ||||||||||||| |||||||||||  |||||||  ||| ||||||  | |||||||||    
T  20398600 agaggttactttgaagtacctcattttttattccgagtcgaaccctcttctctcattattttctctttatttca 20398527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 43598111 - 43597955
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||     
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43598012  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43598011 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43597955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 43603603 - 43603447
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||     
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43603504  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43603503 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43603447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 43609095 - 43608939
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||     
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43608996  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  43608995 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 43608939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 1728227 - 1728068
Alignment:
Q  174 tgctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcgg 273  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |     
T  1728227 tgctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttga 1728128  T
Q  274 cagagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    || ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  1728127 caaagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 1728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 28852549 - 28852706
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||    
T  28852549 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28852648  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  28852649 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 28852706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 28843940 - 28844096
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28844039  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  28844040 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 28844096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 31410890 - 31411065
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||| ||     
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      ||||||||||||| ||||  ||||||||||||||  |||||||| |  |||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattctcagtcgggccctcttctctctttatcttctttttatttcagt 31411065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 31421789 - 31421965
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||| ||     
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  277 agaagttac------gtacctcatttttg-attccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      |||||||||||||| || || |||| | |||||||  ||||||||||  ||||||| |||||    
T  31421889 agatgttactttgaagtacctcatttttgaatgccaagtctgaccctcttctctctttattttctttttatatcagt 31421965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 19223555 - 19223663
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||| | ||||| ||| |||    
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  19223655 agaggttac 19223663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 24841453 - 24841367
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  24841453 gggctggtcaagggatttgtcacactttagtcatcatgtgattggaccttactatgagattgaagcaattctaaacaaacattcaag 24841367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 17027225 - 17027056
Alignment:
Q  7 gggctggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    |||||| |||| |||||||||| |||| |||| |||||||||||| |||| |||||| ||| |||||||| |||| ||||| ||||||| | ||||| ||    
T  17027225 gggctgatcaatgcatttgtcatactccagtcgtcatgtgattgttccttcctatgacatttaagcaattataaacagacactcaaggtatttatcatca 17027126  T
Q  106 tacacac--cgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgggaaagta 173  Q
     ||||||    ||||| |||| |||||||| || || |||||||||||||||| || ||||| |||||||    
T  17027125 cacacacatataaggccttttaaaggttataacatgattgaggttaaggtgggatacatttgagaaagta 17027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 22754641 - 22754482
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca----cca 105  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||| || |||||||||| || ||||     ||    
T  22754641 tggtcaaagcatttgccacactccagtcgtcatgtgattgtaccttgctataagattgaagaaattctaaacaggcattcaaggtatacatcatttcaca 22754542  T
Q  106 tacacaccgaaggcattttcaaggttatcacgtggttgaggttaaggtggggtatatttgg 166  Q
     ||| || || | || |||||||||||| |||||| ||||||||||||||| || ||||||    
T  22754541 cacatacagaggaca-tttcaaggttataacgtggctgaggttaaggtgggataaatttgg 22754482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 11274779 - 11274871
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 102  Q
    |||||||||| |||||||||||| |||  |||||||||| ||||||||||||| |||||||| |||| ||| | ||||||||||| |||||||    
T  11274779 tggtcaaggcgtttgtcacactctagttgtcatgtgattttaccttactatgaaattgaagcgattccaaacaaacattcaaggtatatatca 11274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 41099838 - 41099739
Alignment:
Q  180 cataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagaga 279  Q
    ||||||||||||||||||||||||| |||||| |||| |||||  |||||| |||||||  ||| ||| | |||||||| | ||||||||||||| ||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcggaga 41099739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 40014981 - 40015040
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt--cctctttatttagtttttatttca 344  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||  |||||||||||    
T  40014981 tacctcatttttgattccgagtcgggccctcttttctctctttattttctttttatttca 40015040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 19331247 - 19331160
Alignment:
Q  19 gcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 105  Q
    ||||||||||||||| || | |||||||||| |||||| || |||||||||||||||| || | ||||||||||| |  |||||||||    
T  19331247 gcatttgtcacactccagccgtcatgtgattctaccttgctttgagattgaagcaattatatagagacattcaagatacatatcacca 19331160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 36454733 - 36454773
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  36454733 tacctcatttttgattccgagtcggaccctcttttctcttt 36454773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 20099606 - 20099569
Alignment:
Q  290 ctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  20099606 ctcatttttgattccgagtcggaccctcttttctcttt 20099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 21929236 - 21929285
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttatt 226  Q
    ||||||||||||||||||||| | |||||||  || ||||||||||||||    
T  21929236 tgtcataccccaaattttgacaatttttctcgctttttacccattttatt 21929285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 37048448 - 37048481
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt 320  Q
    |||||||||||| |||||||||||||||||||||    
T  37048448 tacctcattttttattccgagtcgggccctcttt 37048481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 15956940 - 15956900
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  15956940 taccccatttttgattccgagtcgggcccgcttttctcttt 15956900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 23125370 - 23125454
Alignment:
Q  11 tggtcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggt 94  Q
    ||||||||| | ||| ||||||| |||  |||||||||||||| || || |||||||||| |||||||||| | ||| |||||||    
T  23125370 tggtcaaggaacttgccacactccagttgtcatgtgattgtactttgctgtgagattgaaacaattctaaacatacactcaaggt 23125454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 36448355 - 36448395
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||| ||||||||||||||||||| |||||||| ||||||    
T  36448355 taccttatttttgattccgagtcggaccctcttttctcttt 36448395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 15944623 - 15944466
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  15944623 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 15944524  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  15944523 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 15944466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 35138592 - 35138749
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  35138592 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35138691  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35138692 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 35146928 - 35147085
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  35146928 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35147027  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35147028 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35147085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 41233910 - 41233753
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41233910 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41233811  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  41233810 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 41233753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 14582925 - 14583081
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 14583081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 15953137 - 15952981
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 15952981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 38168422 - 38168266
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 38168266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 17687463 - 17687358
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17687364  T
Q  277 agaagt 282  Q
    ||||||    
T  17687363 agaagt 17687358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 42565995 - 42565838
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||    
T  42565995 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 42565896  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  42565895 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 42565838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 42574618 - 42574462
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 42574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 35037884 - 35038031
Alignment:
Q  205 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagagaagttac------gtacctcattttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||       ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  299 gattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
     |||||||||| ||||||||| |||||||||||  |||||||||||||    
T  35037984 tattccgagtcaggccctcttccctctttattttctttttatttcagt 35038031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 20621517 - 20621626
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||| ||    
T  20621517 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgaca 20621616  T
Q  276 gagaagttac 285  Q
     ||| |||||    
T  20621617 aagatgttac 20621626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 25483601 - 25483709
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |||    
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  25483701 agaggttac 25483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 25491207 - 25491315
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |||    
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  25491307 agaggttac 25491315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 20372378 - 20372283
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 272  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcg 20372283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 44372705 - 44372813
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||     
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  44372805 agaggttac 44372813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 44388616 - 44388724
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||     
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  44388716 agaggttac 44388724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 27606709 - 27606608
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||| |||||||||||| ||||||||||||| ||| | |||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||||    
T  27606709 tgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttcggcag 27606611  T
Q  277 aga 279  Q
    |||    
T  27606610 aga 27606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 42249520 - 42249418
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||| |||  ||| | |||||||| | |||||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttcggcag 42249421  T
Q  277 aga 279  Q
    |||    
T  42249420 aga 42249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 35303737 - 35303844
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||| | ||||||||  | |||||| |||||||| |||||| |||| |  ||| ||||||||||||| |||||||||||||||    
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  277 agaagtta 284  Q
    ||| ||||    
T  35303837 agaggtta 35303844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 24285696 - 24285798
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||   || ||||| |||||||| | |||||||||||| ||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttcggtag 24285795  T
Q  277 aga 279  Q
    |||    
T  24285796 aga 24285798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 34070669 - 34070567
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| | || ||||||||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttcggcag 34070570  T
Q  277 aga 279  Q
    |||    
T  34070569 aga 34070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 26903396 - 26903296
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcagag 278  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||  ||| | | |||||| | |||||||||||||||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccgaaaatgtccatcgttttagacgaaatttcggcagag 26903297  T
Q  279 a 279  Q
    |    
T  26903296 a 26903296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 22389179 - 22389265
Alignment:
Q  8 ggctggtcaaggcatttgtcacactcagtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggt 94  Q
    |||||||||||| ||||| ||||| ||||| |||||||| |||||||| |||||| ||||||| |||| |||| | |||||||||||    
T  22389179 ggctggtcaaggtatttgccacacccagtcgtcatgtgactgtaccttgctatgaaattgaagtaattataaacaaacattcaaggt 22389265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 24292371 - 24292433
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||    
T  24292371 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaa 24292433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 39730178 - 39730111
Alignment:
Q  9 gctggtcaaggcatttgtcacactca-gtcatcatgtgattgtaccttactatgagattgaagcaatt 75  Q
    ||||||||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  39730178 gctggtcaaggtatttgccacactcaagtcatcgtgtgattgtacattactatgagattgatgcaatt 39730111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 17687357 - 17687307
Alignment:
Q  300 attccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 350  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  17687357 attccgagccgggccctctttcctctttattttctttttatttcagtgttt 17687307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 21322875 - 21322814
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    |||||||||||||||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  21322875 tgtcataccccaaattttgaccactttt-tctatttgtaccaaattttattcgtatttttaaa 21322814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 18248 - 18208
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  18248 tacctcatttttgattccgagtcggaccctcttttctcttt 18208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 36735439 - 36735479
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  36735439 tacctcatttttgattccgagtcggaccctcttttctcttt 36735479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 20917520 - 20917570
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattc 227  Q
    |||||||| | |||||||||||||||||||||||| |||  ||||||||||    
T  20917520 tgtcatactctaaattttgaccacttttctctatttttattcattttattc 20917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 20279293 - 20279260
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt 320  Q
    ||||||| ||||||||||||||||||||||||||    
T  20279293 tacctcaattttgattccgagtcgggccctcttt 20279260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 31449510 - 31449477
Alignment:
Q  144 aggttaaggtggggtatatttgggaaagtatgct 177  Q
    ||||||||||| ||||||||||||||||||||||    
T  31449510 aggttaaggtgaggtatatttgggaaagtatgct 31449477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 11873790 - 11873849
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctcttt--cctctttatttagtttttatttca 344  Q
    |||||||||||| |||||||||||| ||||||||   ||||||||||  |||||||||||    
T  11873790 tacctcatttttcattccgagtcggaccctcttttctctctttattttctttttatttca 11873849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 31548522 - 31548679
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31548522 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 31548621  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
      || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  31548622 aggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 31548679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 31539954 - 31540110
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 31540110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 35104129 - 35103973
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||     
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     || |||||      |||||||||||||||||||||||||| |||||||| ||||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagtcggaccctcttttctcttt 35103973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 3432956 - 3432799
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  3432956 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 3432857  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
     ||| |||||      ||||||||||||| |||||||||||| |||||||| ||||||    
T  3432856 aagaggttactttgaagtacctcattttttattccgagtcggaccctcttttctcttt 3432799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 32137819 - 32137644
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||     
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    | |||||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  | |||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctctttatttcagt 32137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 41746758 - 41746578
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc-a 275  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 350  Q
     ||| |||||      ||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||| |||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctttattttctttttatttgagtgttt 41746578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 29221554 - 29221451
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||   ||||| ||||||||||||||    
T  29221554 ctgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggca 29221455  T
Q  276 gaga 279  Q
    ||||    
T  29221454 gaga 29221451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 23223220 - 23223131
Alignment:
Q  14 tcaaggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 102  Q
    |||||||||||| ||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  23223220 tcaaggcatttgccacactccaatcgtcatgtgattgtaccttgctatgagattaaagcaattctaaatagacattcaaggtatatatca 23223131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 21498963 - 21498861
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| |||||||  ||| ||| | |||||||| | |||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 21498864  T
Q  277 aga 279  Q
    |||    
T  21498863 aga 21498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 44320257 - 44320149
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   ||||||||||| |||||||||| ||||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  277 agaagttac 285  Q
     || |||||    
T  44320157 ggaggttac 44320149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 51058450 - 51058353
Alignment:
Q  179 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcaga 277  Q
    |||||||||||||||||| ||||||||| | |||| |  ||||||||||||||||||||||  |||||||||||| |||||| |||||||||| |||||    
T  51058450 tcataccccaaattttgatcacttttctttgttct-attcattttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcaga 51058353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 13450139 - 13450198
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||  |||||||||||||    
T  13450139 tacctcatttttgattccgagtcgggctctcttctctctttattttctttttatttcagt 13450198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 28457556 - 28457664
Alignment:
Q  179 tcataccccaaattttgaccacttttctc-tattcttacccatttta-ttcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| || ||||||| || | |  |||   ||||||||||| ||||||||||| |||    
T  28457556 tcataccccaaattttgaccacttttctcgtttttttacccattttattttgtattttaaacgccaagaaggatcgtcgtttcagacgaaatttcgacag 28457655  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  28457656 agaggttac 28457664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 31313097 - 31313020
Alignment:
Q  17 aggcatttgtcacactc-agtcatcatgtgattgtaccttactatgagattgaagcaattctaaatagacattcaagg 93  Q
    ||||||||| ||||||| | || | |||| |||||||||| |||||||||| || |||||||||||||||| ||||||    
T  31313097 aggcatttgccacactccaatcgtgatgttattgtaccttgctatgagattaaaccaattctaaatagacaatcaagg 31313020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 47108478 - 47108518
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  47108478 tacctcattttttattccgagtcgggccctcttttctcttt 47108518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 27754837 - 27754786
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaag 92  Q
    |||||||||||| ||||||||| |||||| |||||||||| ||| |||||||    
T  27754837 atgtgattgtacgttactatgatattgaaacaattctaaacagaaattcaag 27754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 20314092 - 20314058
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctatt 211  Q
    |||||||||||||||||||||||||||| ||||||    
T  20314092 tgtcataccccaaattttgaccacttttttctatt 20314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 31313107 - 31313161
Alignment:
Q  41 atgtgattgtaccttactatgagattgaagcaattctaaatagacattcaaggtc 95  Q
    |||| |||||||||   ||||||||| ||||||||||||||||||| ||||||||    
T  31313107 atgttattgtacctggttatgagattaaagcaattctaaatagacaatcaaggtc 31313161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 52100017 - 52100119
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||| || |||||||||||| |||||||| || |||| |||||| |||||| |||||||  |   ||| | |||||||| | || ||||||||||||    
T  52100017 tgtcatatcctaaattttgaccatttttctctgtttttacacattttgttcgtacttttaaaaccaaaaatgtccgtcgttttagacaaaatttcggcag 52100116  T
Q  277 aga 279  Q
    |||    
T  52100117 aga 52100119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 1961742 - 1961782
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  1961742 tacctcattttttattccgagtcggaccctcttttctcttt 1961782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14397342 - 14397286
Alignment:
Q  10 ctggtcaaggcatttgtcacact-cagtcatcatgtgattgtaccttactatgagat 65  Q
    |||||||||| ||||| |||||| | ||| ||||||||||||||||| |||||||||    
T  14397342 ctggtcaaggtatttgccacactaccgtcgtcatgtgattgtaccttgctatgagat 14397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 18098481 - 18098521
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  18098481 tacctcattttttattccgagtcggaccctcttttctcttt 18098521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 20429459 - 20429499
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  20429459 tacctcatttttgattccgagtcagaccctcttttctcttt 20429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 20518385 - 20518429
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    |||||||||||||| ||||||||||||| ||||  ||||||||||    
T  20518385 tacctcatttttgaatccgagtcgggccttcttctctctttattt 20518429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 39454485 - 39454517
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||||||||| ||||||||||||||||||    
T  39454485 tacctcatttttgaatccgagtcgggccctctt 39454517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 44832515 - 44832475
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  44832515 tacctcattttttattccgagtcggaccctcttttctcttt 44832475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 177 - 350
Target Start/End: Original strand, 33035 - 33214
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||     
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttatttcagtgttt 350  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||   |||||||||  | ||||||||| |||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccctcttctttctttattttctctttatttcattgttt 33214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 176 - 342
Target Start/End: Original strand, 23463 - 23636
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgta-tttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||  ||||||||||||     
T  23463 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggt 23562  T
Q  275 agagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 342  Q
    ||||| |||||      |||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  23563 agagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctttgttttctttttattt 23636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 995 - 823
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  995 ctgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggca 896  T
Q  276 gagaagttac------gtacctcatttttgattccgagtcgggccctctttcctctttatttagtttttattt 342  Q
    || | |||||       |||||||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  895 gaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctttattttctttttattt 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 121228 - 121375
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctct 318  Q
    ||| |||||      |||  |||||||||||||||||||| |||||||    
T  121328 agaggttactttgaagtaaatcatttttgattccgagtcgagccctct 121375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 15813 - 15970
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  277 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctcttt 327  Q
    ||| |||||      |||||||| ||||||||||| |||| |||||||||| ||||||    
T  15913 agaggttactttgaagtacctcattttttgattccaagtcaggccctcttttctcttt 15970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 4390 - 4566
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| |||    
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  277 agaagttac------gtacctca-tttttgattccgagtcgggccctctttcctctttatttagtttttatttcagt 346  Q
    ||| |||||      |||||||| ||||| ||||||||||||||||||||  ||||||||||  |||||||||||||    
T  4490 agaggttactttgaagtacctcatttttttattccgagtcgggccctcttctctctttattttctttttatttcagt 4566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 149 - 1
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||     
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  277 agaagttac------gtacctcatttttgattccgagtcgggccctctt 319  Q
    ||| |||||      ||||||||||||| |||||||||||| |||||||    
T  49 agaggttactttgaagtacctcattttttattccgagtcggaccctctt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 40898 - 40790
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||| ||||||| ||| ||     
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  40798 agaggttac 40790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 139 - 234
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcg 272  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | |||||||||  ||||| |||||||||||    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcg 234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 20547 - 20439
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggcag 276  Q
    |||||||||||||||||||||||||||||| |  | |||| |||||| |||||| |||||||| || |||||||||| |||||| |||||||||||||||    
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  277 agaagttac 285  Q
    ||| |||||    
T  20447 agaggttac 20439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 7255 - 7159
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcgg 273  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||| ||| |||||||| || |||||||||| |||||| ||||||||||||    
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgg 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 192526 - 192630
Alignment:
Q  175 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggc 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||| |||||||  ||| ||| | |||||||| | |||||||||| ||    
T  192526 gctgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcagc 192625  T
Q  275 agaga 279  Q
    |||||    
T  192626 agaga 192630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 438 - 335
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| | ||||||||||||||    
T  438 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttcggca 339  T
Q  276 gaga 279  Q
    ||||    
T  338 gaga 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 65604 - 65501
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| | ||||||||||||||    
T  65604 ctgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 65505  T
Q  276 gaga 279  Q
    ||||    
T  65504 gaga 65501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 81852 - 81749
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| | ||||||||| ||||    
T  81852 ctgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattttggca 81753  T
Q  276 gaga 279  Q
    ||||    
T  81752 gaga 81749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 7694 - 7622
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||| |||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 415 - 518
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||| ||||||||||||||||||| || | |||| |||||| |||||| |||||||  ||| ||| | |||||||| | ||||||||||||||    
T  415 ctgtcataccctaaattttgaccacttttctttaattttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 514  T
Q  276 gaga 279  Q
    ||||    
T  515 gaga 518  T

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Target: scaffold0991 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 438 - 340
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcatacgaaatttcggca 275  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| | ||||||||| ||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattttggca 340  T

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Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 801 - 762
Alignment:
Q  184 ccccaaattttgaccacttttctctattcttacccatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  801 ccccaaattttgaccacttttctctattcttacccatttt 762  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 10974 - 10912
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 238  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  10974 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 10912  T

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Target: scaffold0990 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 3127 - 3009
Alignment:
Q  60 tgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacaccga-----aggcattttcaaggttatcacgtggttgaggttaaggtg 154  Q
    |||||||||||||||| |||||||||||| ||||| ||||||| || ||||||  |     ||| |||||||| ||||| ||||  ||||||||||||||    
T  3127 tgagattgaagcaattataaatagacattgaaggtatatatcatcacacacacatatatagaggtattttcaaagttataacgtatttgaggttaaggtg 3028  T
Q  155 gggtatatttgggaaagta 173  Q
       ||||||| ||||||||    
T  3027 atatatatttcggaaagta 3009  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 11507 - 11457
Alignment:
Q  177 tgtcataccccaaattttgaccacttttct-ctattcttacccattttatt 226  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||    
T  11507 tgtcgtaccccaaattttgaccattttttttctattcttacccattttatt 11457  T

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Target: scaffold0323 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 17669 - 17619
Alignment:
Q  294 tttttgattccgagtcgggccctctttcctctttatttagtttttatttca 344  Q
    ||||| ||||||||||||||||||||  ||||||||||  |||||||||||    
T  17669 ttttttattccgagtcgggccctcttctctctttattttctttttatttca 17619  T

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Target: scaffold0167 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 8084 - 8122
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctct 325  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  8084 tacctcatctttgattccgagtcgggccctcttttctct 8122  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 65744 - 65710
Alignment:
Q  176 ctgtcataccccaaattttgaccacttttctctat 210  Q
    ||||||||||| |||||||||||||||||||||||    
T  65744 ctgtcataccctaaattttgaccacttttctctat 65710  T

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Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 23688 - 23728
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctcttt 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  23688 tacctcattttttattccgagtcggaccctcttttctcttt 23728  T

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Target: scaffold0458 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 9233 - 9201
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||||||||| ||||||||||||||||||    
T  9233 tacctcatttttgaatccgagtcgggccctctt 9201  T

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Target: scaffold0206 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 291 - 259
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  291 tacctcatatttgattccgagtcgggccctctt 259  T

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Target: scaffold0206; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 9053 - 9021
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  9053 tacctcatatttgattccgagtcgggccctctt 9021  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 61288 - 61347
Alignment:
Q  177 tgtcataccccaaattttgaccacttttctcta-ttcttaccca-ttttattcgtattttt 235  Q
    |||||||||||||||||||||||| |||||||| || |||| || ||||||||||||||||    
T  61288 tgtcataccccaaattttgaccac-tttctctattttttactcatttttattcgtattttt 61347  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 4862 - 4906
Alignment:
Q  287 tacctcatttttgattccgagtcgggccctctttcctctttattt 331  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||    
T  4862 tacctcatttttgaatccgagtcgggcccttttctctctttattt 4906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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