View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_47 (Length: 346)
Name: NF9661A_low_47
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 35 - 325
Target Start/End: Complemental strand, 46833906 - 46833609
Alignment:
| Q |
35 |
ttgtatatgaagaatggacatgtataaggtttgagtaaataaaaaa-------tgaacttacttagaggatgataatgaaaagcgcttcccaggctggcg |
127 |
Q |
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| T |
46833906 |
ttgtatatgaagaatgaaaatgtataaggtttgagtaaaaaaaaaaaaaaaaatgaacttacttagaggatgataatgaaaagcgcttcccaggctggcg |
46833807 |
T |
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| Q |
128 |
ttggcgacaagcatacaaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaagga |
227 |
Q |
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| T |
46833806 |
ttggcgacaagcatacaaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaagga |
46833707 |
T |
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| Q |
228 |
tgatcaagcatccctaaaatctccttctccatctctgctctttgtagcttcttccttatagcaagtgcttctctatcaacaactttcatagcatagaa |
325 |
Q |
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| T |
46833706 |
tgatcaagcatccctaaaatctccttctccatctctgctctttgtagcttcttccttatagcaagtgcttctctatcaacaactttcatagcatagaa |
46833609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 6073362 - 6073458
Alignment:
| Q |
143 |
caaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcatc |
239 |
Q |
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| T |
6073362 |
caaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatc |
6073458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 37170406 - 37170315
Alignment:
| Q |
147 |
tcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcat |
238 |
Q |
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| T |
37170406 |
tcaccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcgtagagtgtaggaagaaaaggatgatcaagcat |
37170315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 12235244 - 12235276
Alignment:
| Q |
150 |
ccaccaggacaaaactccataaccaaacaagag |
182 |
Q |
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| T |
12235244 |
ccaccaggacaaaactccataaccaagcaagag |
12235276 |
T |
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