View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_51 (Length: 338)
Name: NF9661A_low_51
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 14321127 - 14321448
Alignment:
| Q |
3 |
gagaacaacgagatatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtgg |
102 |
Q |
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| T |
14321127 |
gagaacgacgagatatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtgg |
14321226 |
T |
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| Q |
103 |
cacctgaaacaaccgcgactaatataaaaaacaccaacccacaagcacggaggcggtagatcttaaaacaaattgccaccaaccatccataaactagata |
202 |
Q |
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| T |
14321227 |
caccttaaacaaccgcgacgaatatcaaaaacaccaacccaccggcacggaggtggtagatcttaaaacaaattgtcaccaaccatccagaaactagata |
14321326 |
T |
|
| Q |
203 |
caacaccgcatcacgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttttaccaccggtag |
302 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14321327 |
caacaccgcatcgcgacccttgacaaacctttaagtcgacgacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttgtaccaccggtag |
14321426 |
T |
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| Q |
303 |
aaaggcgacacatgatgtccat |
324 |
Q |
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| T |
14321427 |
aaaggcgacacacaatgtccat |
14321448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 41907831 - 41907708
Alignment:
| Q |
152 |
gaggcggtagatcttaaaacaaattgccaccaaccatccataaactagatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaa |
251 |
Q |
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||||||||| |||| |||||| || |||| |||||||| | ||||| ||||||||||| ||||| ||||||| |||||||| |||| || |||| || |
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| T |
41907831 |
gaggcggtaaatctgaaaacagatcgccagcaaccatctagaaactggatacaacaccatatcacaacccttggaaaacctttcagtcaacggcatcgaa |
41907732 |
T |
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| Q |
252 |
gaggacaaccgaagaaggttggga |
275 |
Q |
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| T |
41907731 |
gaggacaaccggagaatgttggga |
41907708 |
T |
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