View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_55 (Length: 328)
Name: NF9661A_low_55
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 6916191 - 6916479
Alignment:
| Q |
16 |
tggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
115 |
Q |
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| T |
6916191 |
tggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
6916290 |
T |
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| Q |
116 |
tttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtg |
215 |
Q |
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| T |
6916291 |
tttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagtaccaacagaatttcagggagctgttgctggtg |
6916386 |
T |
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| Q |
216 |
acctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttg |
308 |
Q |
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| T |
6916387 |
acctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttg |
6916479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 15038160 - 15038055
Alignment:
| Q |
16 |
tggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
115 |
Q |
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| T |
15038160 |
tggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctatctatgct |
15038061 |
T |
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| Q |
116 |
tttaga |
121 |
Q |
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| T |
15038060 |
tttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
123 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
222 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
223 |
caag |
226 |
Q |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
226 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
288 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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