View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_58 (Length: 327)

Name: NF9661A_low_58
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_58
NF9661A_low_58
[»] chr8 (2 HSPs)
chr8 (7-291)||(33555454-33555738)
chr8 (5-49)||(31336802-31336846)
[»] chr5 (3 HSPs)
chr5 (5-54)||(13796352-13796401)
chr5 (7-61)||(15889435-15889489)
chr5 (4-41)||(32675296-32675333)
[»] scaffold0016 (1 HSPs)
scaffold0016 (7-54)||(99061-99108)
[»] chr6 (1 HSPs)
chr6 (5-63)||(12700402-12700460)
[»] chr2 (2 HSPs)
chr2 (4-50)||(32458323-32458369)
chr2 (7-43)||(35685062-35685098)
[»] chr7 (1 HSPs)
chr7 (9-50)||(2648298-2648339)
[»] chr1 (1 HSPs)
chr1 (7-56)||(51503703-51503752)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 33555454 - 33555738
Alignment:
Q  7 acaatgcataatatattcaaggtctagggtacgaactccgacaaccaccagaaaataaatgtaggattcaaaagagatgtaactaaagtctaaacgagaa 106  Q
    ||||||||||||||||||||| | |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33555454 acaatgcataatatattcaagatttagggtacgaactccagcaaccaccaaaaaataaatgtaggattcaaaagagatgtaactaaagtctaaacgagaa 33555553  T
Q  107 ttgtttctcgaaatttaaacttgatttatgaacatattttgattgaccattggattgtgaaaacttatttttatttttatcaaagcaaaaggtagacgag 206  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33555554 ttgtttctcgaaatttgaacttgatttatgaacatatcttgattgaccattggattgtgaaaacttatttttatttttatcaaagcaaaaggtagacgag 33555653  T
Q  207 tgtagctgttttacttggtagtgaagtacacgtggctagctgatattaatcagttggttgtggataatttatccaacattattta 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33555654 tgtagctgttttacttggtagtgaagtacacgtggctagctgatattaattagttggttgtggataatttatccaacattattta 33555738  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 31336846 - 31336802
Alignment:
Q  5 gaacaatgcataatatattcaaggtctagggtacgaactccgaca 49  Q
    |||||||||||||||||| ||||||||||||| | ||| ||||||    
T  31336846 gaacaatgcataatatatgcaaggtctagggttcaaaccccgaca 31336802  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 13796352 - 13796401
Alignment:
Q  5 gaacaatgcataatatattcaaggtctagggtacgaactccgacaaccac 54  Q
    |||||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  13796352 gaacaatgcataatatatgcaaggtctggggtacaaactccgaccaccac 13796401  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 15889435 - 15889489
Alignment:
Q  7 acaatgcataatatattcaaggtctagggtacgaactccgacaaccaccagaaaa 61  Q
    |||||||||||||||| ||||||||||||| | ||| ||||| ||||||| ||||    
T  15889435 acaatgcataatatatgcaaggtctagggttcaaaccccgaccaccaccaaaaaa 15889489  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 32675333 - 32675296
Alignment:
Q  4 agaacaatgcataatatattcaaggtctagggtacgaa 41  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  32675333 agaacaatgcataatatatgcaaggtctagggttcgaa 32675296  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 99061 - 99108
Alignment:
Q  7 acaatgcataatatattcaaggtctagggtacgaactccgacaaccac 54  Q
    |||||||||||||||| |||||||| |||| | |||||||||||||||    
T  99061 acaatgcataatatatgcaaggtctggggttcaaactccgacaaccac 99108  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 12700460 - 12700402
Alignment:
Q  5 gaacaatgcataatatattcaaggtctagggtacgaactccgacaaccaccagaaaata 63  Q
    |||||||||||||||||| |||||||||||||  |||| ||| | ||||||| ||||||    
T  12700460 gaacaatgcataatatatgcaaggtctagggtttgaaccccggccaccaccaaaaaata 12700402  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 32458323 - 32458369
Alignment:
Q  4 agaacaatgcataatatattcaaggtctagggtacgaactccgacaa 50  Q
    ||||||||||||||||||| ||||||| ||||| | |||||||||||    
T  32458323 agaacaatgcataatatatgcaaggtccagggttcaaactccgacaa 32458369  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 35685098 - 35685062
Alignment:
Q  7 acaatgcataatatattcaaggtctagggtacgaact 43  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  35685098 acaatgcataatatatgcaaggtctagggttcgaact 35685062  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2648298 - 2648339
Alignment:
Q  9 aatgcataatatattcaaggtctagggtacgaactccgacaa 50  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  2648298 aatgcataatatatgcaaggtccagggttcgaactccgacaa 2648339  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 51503703 - 51503752
Alignment:
Q  7 acaatgcataatatattcaaggtctagggtacgaactccgacaaccacca 56  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | |||||||    
T  51503703 acaatgcataatatatccaaggtctagggttcgaacgccggccaccacca 51503752  T

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