View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_65 (Length: 313)
Name: NF9661A_low_65
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 34894200 - 34894411
Alignment:
| Q |
44 |
agagattaacaataatggctatatagaggaaaattgattagnnnnnnnnngctatatattggaaaggaatgtgaaaatacaacattcgtgaaaattctcg |
143 |
Q |
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| T |
34894200 |
agagattaacaataatggctatatagaggaaaattgattagaaaaaaaa-gctatatattagaaaggaatgtgaaaatacaacattcgtgaaaattctcg |
34894298 |
T |
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| Q |
144 |
tgaaaaaggcttctcggtatatagcatagctgtttattgcttgaaaaatgtaattaattcataggttgtcttatatgaaattattgatgtgctttcccgc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34894299 |
tgaaaaaggcttctcggtatatagcatagctgtttattgcttgaaaaatgtaattaattcataggttgtcttatatgaaattattgatgtgctttcccgc |
34894398 |
T |
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| Q |
244 |
tccttagtattaa |
256 |
Q |
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||||||||||||| |
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| T |
34894399 |
tccttagtattaa |
34894411 |
T |
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