View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_66 (Length: 312)
Name: NF9661A_low_66
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 26 - 268
Target Start/End: Complemental strand, 13020977 - 13020735
Alignment:
| Q |
26 |
gaatatggagagtatgttgatggacaaggaacaaataggaagatagatgaggtttaacattgacaacaagaataaagaaaagaaagttgatggtccatct |
125 |
Q |
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| T |
13020977 |
gaatatggagaatatgttgatggacaaggaacaaataggaagatagatgaggtttaacaatgacaacaagaataaagaaaagaaagttgatggtccatct |
13020878 |
T |
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| Q |
126 |
tgttaaaaacgaagtatcacatgtatgcacatgatatacaactacgttgtaatatctaccaccctatcaaaattcttttaacacaagcaagacattgcat |
225 |
Q |
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| T |
13020877 |
tgttaaaaacgaagtatcacatgtatgcacatgatatacaactaagttgtaatatctatcaccctatcaaaattcttttaacacaagcaagacattgcat |
13020778 |
T |
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| Q |
226 |
ttgtggtttgaggactttggaaaattacttgcagatacaggca |
268 |
Q |
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| T |
13020777 |
ttgtggtttgaggactttggaaaattacttgcagatacaggca |
13020735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 13020209 - 13020161
Alignment:
| Q |
259 |
gatacaggcacaaccattacctcaaaagttgagggaatcacacattgtt |
307 |
Q |
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| T |
13020209 |
gatacaggcacaactattacctctaaagttgagggaatcacacattgtt |
13020161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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