View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_67 (Length: 308)
Name: NF9661A_low_67
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 2466919 - 2466642
Alignment:
| Q |
1 |
ttatactccaataatacgagaaatgtcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttattta |
100 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466919 |
ttatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttattta |
2466820 |
T |
|
| Q |
101 |
tttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
2466819 |
tttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---agttgcctggtg |
2466741 |
T |
|
| Q |
201 |
ggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2466740 |
ggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataat |
2466642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 2462832 - 2462594
Alignment:
| Q |
43 |
atataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaatt |
142 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
2462832 |
atataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagt |
2462735 |
T |
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| Q |
143 |
gaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
242 |
Q |
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| T |
2462734 |
gaaaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
2462651 |
T |
|
| Q |
243 |
atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2462650 |
atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataat |
2462594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 3063274 - 3063403
Alignment:
| Q |
170 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
269 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
270 |
gtgagtttctccaaacaacctgagtataat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
3063374 |
gtgagtttctccaaacaacctgagtataat |
3063403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 160 - 299
Target Start/End: Complemental strand, 2458154 - 2458018
Alignment:
| Q |
160 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat |
259 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||| |
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| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat |
2458058 |
T |
|
| Q |
260 |
ccaacacgttgtgagtttctccaaacaacctgagtataat |
299 |
Q |
| |
|
|||| ||| | || ||||||||||||||||||||| |||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaat |
2458018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
| Q |
163 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
262 |
Q |
| |
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|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca |
2470004 |
T |
|
| Q |
263 |
acacgttgtgagtttctccaaacaacctgagt |
294 |
Q |
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| ||||||| |||||||||||| |||||||| |
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| T |
2470003 |
atccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 2474368 - 2474238
Alignment:
| Q |
166 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca |
265 |
Q |
| |
|
||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| | |
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| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata |
2474272 |
T |
|
| Q |
266 |
cgttgtgagtttctccaaacaacctgagtataat |
299 |
Q |
| |
|
|||| || |||||||||||| ||||||||||||| |
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| T |
2474271 |
cgttttgtgtttctccaaaccacctgagtataat |
2474238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
197 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga |
273 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 2486576 - 2486512
Alignment:
| Q |
235 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
299 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat |
2486512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 18016046 - 18015917
Alignment:
| Q |
170 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
270 |
gtgagtttctccaaacaacctgagtataat |
299 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
18015946 |
gtgagtttctccaaacaacctgagtataat |
18015917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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