View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_68 (Length: 308)
Name: NF9661A_low_68
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 43021144 - 43021431
Alignment:
| Q |
6 |
agattttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccata |
105 |
Q |
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| T |
43021144 |
agattttggatacttttgaagggggcatatatggccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccata |
43021243 |
T |
|
| Q |
106 |
aagaagccgcaggaggaatggtagtagtgctgaaacgaatataacatataaacataatttggctcctatccaccttttttagattcttccacaagggccc |
205 |
Q |
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| T |
43021244 |
aagaagtcgcaggaggaatggtagtagtgcagaaacgaatataacatataaacataatatggctcctatccaccttttttagattcttccacaagggccc |
43021343 |
T |
|
| Q |
206 |
caactttgtgtgtctgcttctattttacagaccccactctggatttcatttgtttaatttcattaattgattacactttaacttggat |
293 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021344 |
caactttgtgtgtctgcttctatttttcagaccccactctgcatttcatttgtttaatttcattaattgattacactttaacttggat |
43021431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 13675784 - 13675644
Alignment:
| Q |
10 |
tttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaaga |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||||||||| | || ||||||||| || |
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| T |
13675784 |
tttggatacttttgaagggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatga |
13675685 |
T |
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| Q |
110 |
agccgcaggaggaatggtagtagtgctgaaacgaatataac |
150 |
Q |
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| T |
13675684 |
agttgcaggaggaatggtagtaatgcagaaacgaatataac |
13675644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 19964935 - 19965075
Alignment:
| Q |
10 |
tttggatacttttgaagggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaaga |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||| ||| | | |||||||||||| || |
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| T |
19964935 |
tttggatacttttgaagggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatga |
19965034 |
T |
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| Q |
110 |
agccgcaggaggaatggtagtagtgctgaaacgaatataac |
150 |
Q |
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| T |
19965035 |
agttgcaggaggaatggtagtaatgcagaaacgaatataac |
19965075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 50805724 - 50805826
Alignment:
| Q |
48 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagccgcaggaggaatggtagtagtgctgaaacgaatat |
147 |
Q |
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||||||| | |||||| |||||||||| |||||||||||| ||| | |||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50805724 |
agcatttgtgctagcatttttatatggtttcttggtatgctagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50805823 |
T |
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| Q |
148 |
aac |
150 |
Q |
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||| |
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| T |
50805824 |
aac |
50805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 50870153 - 50870051
Alignment:
| Q |
48 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagccgcaggaggaatggtagtagtgctgaaacgaatat |
147 |
Q |
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||||||| | |||||| |||||||||| |||||||||| | | | | || ||||||||| |||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50870153 |
agcatttgtgctagcatttttatatggtttcttggtatacaaaaaaattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50870054 |
T |
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| Q |
148 |
aac |
150 |
Q |
| |
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||| |
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| T |
50870053 |
aac |
50870051 |
T |
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