View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_72 (Length: 302)
Name: NF9661A_low_72
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_72 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 4083159 - 4082869
Alignment:
| Q |
12 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggtgtttgatatcggtgttgtagggggcggcggcaattttcttcttcgaa |
111 |
Q |
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| T |
4083159 |
atgaatattgtagcgtttgttgtgtttttgtccgtggttgtggcttctttggtgtttgatatcggtgttgtagggggcggcgtcaattttcttcttcgaa |
4083060 |
T |
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| Q |
112 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatatagaaatggacctatcaatgaattattggc |
211 |
Q |
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| T |
4083059 |
atcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatgaaaaatttagaaatggacctattaataaattgttggc |
4082960 |
T |
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| Q |
212 |
attgtcatagggcaatcttcttcccatgacaaaagatattatctatgtaagtgatttctattgctgacaatttgttctatgttctttgtct |
302 |
Q |
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| T |
4082959 |
attgtcatagggcaatcttcttcccatgacaaaagatattatcgatgtaagtgatttctattgctgacaatttgttctatgttctttgtct |
4082869 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 48203029 - 48203072
Alignment:
| Q |
103 |
ttcttcgaaatcgaacactacatagagttgtgattatggcaatg |
146 |
Q |
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| T |
48203029 |
ttcttcggaatcgaaaactacatatagttgtgattatggcaatg |
48203072 |
T |
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