View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_73 (Length: 300)

Name: NF9661A_low_73
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_73
NF9661A_low_73
[»] chr5 (2 HSPs)
chr5 (17-166)||(5254446-5254589)
chr5 (225-275)||(5254644-5254694)
[»] chr7 (8 HSPs)
chr7 (38-166)||(4469734-4469858)
chr7 (38-166)||(38691057-38691179)
chr7 (225-300)||(4469605-4469680)
chr7 (38-101)||(39669443-39669506)
chr7 (225-276)||(39669603-39669654)
chr7 (230-275)||(38690952-38690997)
chr7 (225-269)||(4468349-4468393)
chr7 (43-94)||(4468526-4468577)
[»] chr1 (5 HSPs)
chr1 (38-191)||(20133868-20134016)
chr1 (225-300)||(24523698-24523773)
chr1 (38-101)||(24523869-24523932)
chr1 (225-276)||(20133787-20133838)
chr1 (230-300)||(20142140-20142209)
[»] chr8 (2 HSPs)
chr8 (38-191)||(6647846-6647995)
chr8 (225-300)||(6648025-6648100)
[»] chr6 (2 HSPs)
chr6 (43-166)||(11144219-11144338)
chr6 (225-276)||(11144106-11144157)
[»] chr2 (2 HSPs)
chr2 (38-166)||(13859575-13859699)
chr2 (225-300)||(13859754-13859829)
[»] chr3 (2 HSPs)
chr3 (38-166)||(7551350-7551472)
chr3 (225-276)||(7551530-7551581)
[»] scaffold0136 (2 HSPs)
scaffold0136 (38-101)||(40888-40951)
scaffold0136 (225-300)||(40720-40795)
[»] scaffold0416 (1 HSPs)
scaffold0416 (225-276)||(4368-4419)
[»] chr4 (1 HSPs)
chr4 (225-275)||(3993326-3993376)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 5254446 - 5254589
Alignment:
Q  17 acatcatgttaaaagatctaatatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagaca 116  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||     || |||||||    
T  5254446 acatcatgttaaaagatctaatatagagag--ttgagagattattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagaca 5254538  T
Q  117 aacgttagatggggtttt-tcttttctttggtggtacaaatttaaagagaa 166  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  5254539 aacgttagatgaggttttttcttttctttggtggcacaaatttaatgagaa 5254589  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 5254644 - 5254694
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactac 275  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  5254644 atatggggatcgttgtttatattaccaaataaatagagaaaatagcactac 5254694  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 4469858 - 4469734
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-c 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     || |||||||||||||||||| ||||||| |    
T  4469858 tatatagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagtt-----accaaagacaaacgttagatgaggttttttc 4469764  T
Q  137 ttttctttggtggtacaaatttaaagagaa 166  Q
    ||||||||||||| |||||||||| |||||    
T  4469763 ttttctttggtggcacaaatttaatgagaa 4469734  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 38691179 - 38691057
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 137  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||      |||| ||||||||||||||||| | |||||| |    
T  38691179 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagtta-----attaccaaagacaaacgttagat-gagttttttt 38691086  T
Q  138 tttctttggtggtacaaatttaaagagaa 166  Q
    |||||||| ||| |||||||||| |||||    
T  38691085 tttctttgttggcacaaatttaatgagaa 38691057  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 4469680 - 4469605
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  4469680 atatggggttcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatga 4469605  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 39669443 - 39669506
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 101  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39669443 tatatagagatttgaaagatgattagtttgacataaagtggcacatatgtagacagagttagtt 39669506  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 39669603 - 39669654
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39669603 atatggggatcggtgtttatattgccaaataaatagaaaaaatagcactacc 39669654  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 38690997 - 38690952
Alignment:
Q  230 gggatcggtgtttatattgccaaataaatagagaaaatagcactac 275  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  38690997 gggatcggtggttatattgccaaataaatagagaaaataacactac 38690952  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 4468393 - 4468349
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatag 269  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  4468393 atatggggattgatgtttatattgccaaataaatagagaaaatag 4468349  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 4468577 - 4468526
Alignment:
Q  43 agagagttgagagatgattagtttggcataaagtggcacatatgtagacaga 94  Q
    ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  4468577 agagatttgagagaggattactttggcataaagtggcacaaatgtagacaga 4468526  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 20134016 - 20133868
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 137  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||     || |||||||||||||||||| ||||||| |    
T  20134016 tatatagagagttgagaaatgattagtttggcataaagtggcacagatgtagacagagttagtt-----accaaagacaaacgttagatgaggttttttt 20133922  T
Q  138 tttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 191  Q
    |||||||||||| |||||||||| |||||        |||||||||||||||||    
T  20133921 tttctttggtggcacaaatttaatgagaaatttttttagcaaaagtttgtttag 20133868  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 24523773 - 24523698
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  24523773 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatga 24523698  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 24523932 - 24523869
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 101  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  24523932 tatatagagagttaagagatgattagtttgacataaaatggcacatatgtagacagagttagtt 24523869  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 20133838 - 20133787
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 276  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  20133838 atatggggatcggtgattatatttccaaataaatagagaaaatagcactacc 20133787  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 20142209 - 20142140
Alignment:
Q  230 gggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||    
T  20142209 gggatccgtgtttatattgccaaataaataga-aaaatagcactaccaaaaaaatagaaaacaaactatga 20142140  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 6647846 - 6647995
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tc 136  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||  ||||| ||    
T  6647846 tatatagagagttgaaagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgatgttttttc 6647940  T
Q  137 ttttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 191  Q
    ||||||||||||| |||||||||| |||||        |||||||||||||||||    
T  6647941 ttttctttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttag 6647995  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 6648025 - 6648100
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  6648025 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatga 6648100  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 11144338 - 11144219
Alignment:
Q  43 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-cttttc 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||| | ||||| ||||||    
T  11144338 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgagattttttcttttc 11144244  T
Q  142 tttggtggtacaaatttaaagagaa 166  Q
    ||| |||||| |||||||| |||||    
T  11144243 tttagtggtataaatttaatgagaa 11144219  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 11144157 - 11144106
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11144157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 11144106  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 13859575 - 13859699
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatg-gggtttttc 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||  |||||||||||||| ||| || ||||||    
T  13859575 tatatagagagttgagagatgattagtttggcataaagtggcacatatatagacagagtta-----gttatcaaagacaaacgttatatgaggttttttc 13859669  T
Q  137 ttttctttggtggtacaaatttaaagagaa 166  Q
    ||||||||||||| |||||||||| |||||    
T  13859670 ttttctttggtggcacaaatttaatgagaa 13859699  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 13859754 - 13859829
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||    
T  13859754 atatggggatcagtgtttatattgccaaataaatatagaaaatagcactaccaaaaaaatagaaaacaaactatga 13859829  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 7551350 - 7551472
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 137  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||     || ||||||||||||||||||   ||||| |    
T  7551350 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagttagtt-----accaaagacaaacgttagatgatattttt-t 7551443  T
Q  138 tttctttggtggtacaaatttaaagagaa 166  Q
    |||||||| ||| |||||||||| |||||    
T  7551444 tttctttgttggcacaaatttaatgagaa 7551472  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 7551530 - 7551581
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7551530 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 7551581  T

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Target: scaffold0136 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 40951 - 40888
Alignment:
Q  38 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 101  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  40951 tatatagagagttgagagatgattagtttgacataaagtggcacatatgtagacaaagttagtt 40888  T

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Target: scaffold0136; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 40795 - 40720
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatga 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  40795 atatgaggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatga 40720  T

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Target: scaffold0416 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 4419 - 4368
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 276  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4419 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 4368  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 3993376 - 3993326
Alignment:
Q  225 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactac 275  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  3993376 atatggggatcggtgtttatattgctaaataaatagagaaaatagcgctac 3993326  T

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