View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_89 (Length: 279)
Name: NF9661A_low_89
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 38867612 - 38867874
Alignment:
| Q |
2 |
tgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtatgagaagttcatgcttcaa |
100 |
Q |
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| T |
38867612 |
tgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcagaagttcctgcttcaa |
38867711 |
T |
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| Q |
101 |
aagaatgaaacagcnnnnnnnnn---------catcaaataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagtttt |
191 |
Q |
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| T |
38867712 |
aaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctagaaatatggagtatcattttacttttcagtttt |
38867811 |
T |
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| Q |
192 |
ttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgc |
254 |
Q |
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| T |
38867812 |
ttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgc |
38867874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
130 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
229 |
Q |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
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| Q |
230 |
agccact |
236 |
Q |
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| T |
38598798 |
agtcact |
38598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
133 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
197 |
Q |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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