View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_91 (Length: 279)
Name: NF9661A_low_91
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_91 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 42009738 - 42009467
Alignment:
| Q |
8 |
tggacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
107 |
Q |
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| T |
42009738 |
tggacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
42009639 |
T |
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| Q |
108 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaag |
207 |
Q |
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| T |
42009638 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaag |
42009539 |
T |
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| Q |
208 |
ctccaaagtgacacttctcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctga |
279 |
Q |
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| T |
42009538 |
ctccaaagcgacacttttcacttgttcaaggtccgacatctttttattttcaatttccttctgaatagctga |
42009467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 1245074 - 1244805
Alignment:
| Q |
10 |
gacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
109 |
Q |
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| T |
1245074 |
gacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
1244975 |
T |
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| Q |
110 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagct |
209 |
Q |
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| T |
1244974 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagct |
1244875 |
T |
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| Q |
210 |
ccaaagtgacacttctcacttgttcaaggtccggcatctttttattttcaatttccttctgaatagctga |
279 |
Q |
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| T |
1244874 |
ccaaagtgacacttttcacttgttcaaggtccgacatctttttattttcaattttcttctgaatagctga |
1244805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 23787589 - 23787516
Alignment:
| Q |
143 |
accaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagt |
216 |
Q |
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| T |
23787589 |
accaagcttcgaagagtgttttcttcatctactactttctgcagtgattctttcgcaccatcaagctccgaagt |
23787516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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