View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_96 (Length: 264)
Name: NF9661A_low_96
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 27120844 - 27120675
Alignment:
| Q |
9 |
aacagagaaattgagaaaacataccaaagagttagctacacatgtttgttgaagtagatgaatttgtaacagacacacatgtgaattttgatgaagaaga |
108 |
Q |
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| T |
27120844 |
aacagagaaattgagaaaacataccaaagagttagttacacatgtttgttgaagtagatgaatttgtaacagacacacatgtgaattttgatgaagaaga |
27120745 |
T |
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| Q |
109 |
tatttggagtatattgttctttgtttatgggtgcgtgcgtgtggactaataatggtaatgtgcgtgagag |
178 |
Q |
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| T |
27120744 |
tatttggagtatattgttctttgtttatgggtgcgtgcgtgtggactaataatggtaatgtgcgtgagag |
27120675 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 27120644 - 27120589
Alignment:
| Q |
209 |
agtcaataaaaagatgacacgtggataacattggaaaaagaacagagatggtttga |
264 |
Q |
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| T |
27120644 |
agtcaataaaaagatgacacgtggagaacattggaaaaagaacagagatggtttga |
27120589 |
T |
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