View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_99 (Length: 261)

Name: NF9661A_low_99
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_99
NF9661A_low_99
[»] chr4 (39 HSPs)
chr4 (13-179)||(51015042-51015208)
chr4 (8-181)||(11006607-11006781)
chr4 (8-181)||(9176862-9177035)
chr4 (13-173)||(37089745-37089906)
chr4 (34-181)||(16932213-16932360)
chr4 (8-181)||(9174512-9174684)
chr4 (34-183)||(22783170-22783319)
chr4 (13-173)||(24888598-24888758)
chr4 (39-183)||(16934572-16934716)
chr4 (26-181)||(36919971-36920125)
chr4 (13-147)||(22803104-22803238)
chr4 (7-184)||(36921860-36922036)
chr4 (13-147)||(22044760-22044896)
chr4 (13-181)||(38408993-38409161)
chr4 (13-181)||(5637839-5638006)
chr4 (13-144)||(31849970-31850101)
chr4 (34-181)||(22780805-22780952)
chr4 (8-181)||(3824939-3825112)
chr4 (8-124)||(11008958-11009075)
chr4 (64-181)||(7941133-7941251)
chr4 (64-181)||(11434769-11434887)
chr4 (39-181)||(18846923-18847067)
chr4 (13-129)||(5198266-5198382)
chr4 (8-147)||(48486147-48486286)
chr4 (43-147)||(9148088-9148192)
chr4 (7-127)||(24880299-24880419)
chr4 (64-147)||(22801262-22801345)
chr4 (13-94)||(22047055-22047135)
chr4 (43-147)||(52942869-52942973)
chr4 (8-127)||(619813-619932)
chr4 (13-76)||(52942818-52942881)
chr4 (8-128)||(24878836-24878956)
chr4 (13-147)||(40091786-40091920)
chr4 (98-147)||(22048492-22048541)
chr4 (8-55)||(47274647-47274694)
chr4 (39-88)||(16689331-16689380)
chr4 (39-87)||(8529012-8529060)
chr4 (13-57)||(11434873-11434917)
chr4 (13-57)||(22801232-22801276)
[»] chr2 (18 HSPs)
chr2 (8-173)||(19502377-19502542)
chr2 (13-173)||(27104523-27104683)
chr2 (17-182)||(19504720-19504885)
chr2 (34-181)||(24162604-24162752)
chr2 (34-181)||(36559211-36559358)
chr2 (8-147)||(21521061-21521200)
chr2 (43-181)||(36561539-36561677)
chr2 (34-181)||(45332528-45332675)
chr2 (13-147)||(42064265-42064399)
chr2 (8-147)||(6259181-6259320)
chr2 (13-89)||(13910415-13910491)
chr2 (64-173)||(43623968-43624077)
chr2 (8-147)||(22407775-22407914)
chr2 (34-78)||(36561488-36561532)
chr2 (64-129)||(6264546-6264611)
chr2 (63-147)||(40032468-40032552)
chr2 (13-57)||(43623938-43623982)
chr2 (43-78)||(36561518-36561553)
[»] chr1 (31 HSPs)
chr1 (8-181)||(20302198-20302372)
chr1 (8-181)||(51752104-51752278)
chr1 (8-181)||(13761577-13761750)
chr1 (8-181)||(51749778-51749952)
chr1 (8-143)||(6823661-6823797)
chr1 (8-181)||(10400196-10400369)
chr1 (34-173)||(16225895-16226034)
chr1 (13-147)||(28840452-28840586)
chr1 (39-181)||(47179428-47179570)
chr1 (7-147)||(15823320-15823460)
chr1 (13-147)||(28842267-28842401)
chr1 (34-181)||(47177078-47177224)
chr1 (64-181)||(6822775-6822893)
chr1 (43-181)||(23783238-23783376)
chr1 (76-182)||(20291279-20291386)
chr1 (8-147)||(13214855-13214994)
chr1 (64-147)||(16231375-16231458)
chr1 (13-147)||(3579991-3580125)
chr1 (182-226)||(50767703-50767747)
chr1 (7-124)||(41646717-41646834)
chr1 (34-78)||(23783362-23783406)
chr1 (39-128)||(30790793-30790882)
chr1 (18-74)||(28207444-28207500)
chr1 (99-181)||(47451405-47451488)
chr1 (13-129)||(39462310-39462426)
chr1 (64-147)||(49687335-49687418)
chr1 (39-88)||(13449947-13449996)
chr1 (99-147)||(38925915-38925964)
chr1 (8-56)||(14098337-14098385)
chr1 (13-61)||(47451508-47451556)
chr1 (8-56)||(49687405-49687453)
[»] chr3 (36 HSPs)
chr3 (8-181)||(22114669-22114842)
chr3 (41-181)||(6063866-6064006)
chr3 (34-181)||(18099560-18099707)
chr3 (13-180)||(5191374-5191541)
chr3 (34-182)||(50493675-50493823)
chr3 (34-181)||(38210067-38210214)
chr3 (52-165)||(10192401-10192513)
chr3 (40-181)||(53896613-53896754)
chr3 (32-164)||(5899476-5899608)
chr3 (13-122)||(10956396-10956505)
chr3 (52-165)||(10085481-10085593)
chr3 (50-181)||(18097291-18097422)
chr3 (32-124)||(25388654-25388746)
chr3 (64-147)||(38889792-38889875)
chr3 (32-126)||(5886039-5886133)
chr3 (8-147)||(32264407-32264546)
chr3 (13-147)||(1321195-1321329)
chr3 (13-147)||(5522984-5523118)
chr3 (64-147)||(11162925-11163008)
chr3 (13-147)||(26720302-26720436)
chr3 (64-181)||(35777163-35777280)
chr3 (13-88)||(10958692-10958767)
chr3 (66-147)||(11170179-11170260)
chr3 (64-181)||(6719532-6719651)
chr3 (98-181)||(7606880-7606963)
chr3 (8-79)||(3859350-3859421)
chr3 (64-123)||(6066195-6066254)
chr3 (13-147)||(24177033-24177167)
chr3 (8-88)||(45882752-45882832)
chr3 (8-57)||(35777266-35777314)
chr3 (133-183)||(3859315-3859365)
chr3 (39-88)||(4308676-4308725)
chr3 (8-57)||(6719497-6719546)
chr3 (13-58)||(10084762-10084807)
chr3 (13-58)||(10191682-10191727)
chr3 (8-57)||(38889861-38889910)
[»] scaffold0127 (1 HSPs)
scaffold0127 (34-181)||(12907-13054)
[»] chr6 (16 HSPs)
chr6 (13-181)||(14507546-14507716)
chr6 (13-147)||(19227780-19227914)
chr6 (34-181)||(26068735-26068882)
chr6 (13-147)||(8995289-8995423)
chr6 (13-147)||(9019736-9019870)
chr6 (34-181)||(26066464-26066611)
chr6 (34-181)||(33308685-33308832)
chr6 (34-181)||(33310954-33311101)
chr6 (34-181)||(29755132-29755279)
chr6 (13-173)||(11983400-11983558)
chr6 (13-124)||(4816639-4816749)
chr6 (32-147)||(15530512-15530627)
chr6 (8-98)||(30729194-30729284)
chr6 (39-88)||(26084818-26084867)
chr6 (64-129)||(32279845-32279910)
chr6 (13-98)||(15541511-15541596)
[»] chr5 (34 HSPs)
chr5 (34-181)||(34477485-34477632)
chr5 (8-147)||(38881879-38882018)
chr5 (64-181)||(2174680-2174797)
chr5 (8-181)||(31544798-31544971)
chr5 (34-181)||(10749505-10749652)
chr5 (32-173)||(4236378-4236519)
chr5 (8-181)||(31542442-31542615)
chr5 (34-181)||(10756960-10757107)
chr5 (34-181)||(15354918-15355065)
chr5 (34-181)||(15357194-15357341)
chr5 (13-147)||(16775931-16776065)
chr5 (64-181)||(34479855-34479972)
chr5 (64-181)||(39797849-39797966)
chr5 (64-182)||(25921874-25921993)
chr5 (34-124)||(31179807-31179897)
chr5 (34-182)||(23664833-23664981)
chr5 (34-182)||(23793606-23793754)
chr5 (34-181)||(23667109-23667256)
chr5 (13-90)||(21684832-21684909)
chr5 (64-147)||(659747-659829)
chr5 (64-181)||(38960487-38960604)
chr5 (46-126)||(659850-659929)
chr5 (8-147)||(21947804-21947940)
chr5 (64-181)||(31466379-31466496)
chr5 (83-183)||(18186489-18186589)
chr5 (64-147)||(2818729-2818812)
chr5 (8-147)||(20507828-20507967)
chr5 (45-147)||(20504316-20504418)
chr5 (117-181)||(21684905-21684969)
chr5 (8-53)||(39797956-39798001)
chr5 (39-88)||(39854317-39854366)
chr5 (39-88)||(42238047-42238096)
chr5 (40-88)||(1240171-1240219)
chr5 (32-88)||(4409890-4409946)
[»] chr8 (15 HSPs)
chr8 (34-181)||(18812668-18812815)
chr8 (34-181)||(43079347-43079494)
chr8 (42-181)||(43081722-43081861)
chr8 (13-147)||(27826816-27826950)
chr8 (13-147)||(27829127-27829261)
chr8 (13-147)||(12517397-12517531)
chr8 (34-181)||(18810483-18810630)
chr8 (8-181)||(44720617-44720790)
chr8 (13-173)||(14807556-14807716)
chr8 (8-173)||(15067785-15067950)
chr8 (43-147)||(28251988-28252092)
chr8 (8-181)||(15072506-15072679)
chr8 (64-127)||(3886322-3886386)
chr8 (64-147)||(4423869-4423952)
chr8 (13-78)||(28251937-28252002)
[»] chr7 (20 HSPs)
chr7 (13-181)||(3878322-3878490)
chr7 (34-181)||(1047356-1047503)
chr7 (34-181)||(2935070-2935217)
chr7 (34-181)||(9027540-9027687)
chr7 (34-181)||(22136878-22137025)
chr7 (8-182)||(27306595-27306768)
chr7 (34-181)||(40551905-40552052)
chr7 (8-147)||(35413-35552)
chr7 (8-147)||(44348-44487)
chr7 (13-144)||(25542317-25542448)
chr7 (34-181)||(22107867-22108014)
chr7 (34-181)||(40549627-40549774)
chr7 (64-181)||(40837144-40837261)
chr7 (64-181)||(26804345-26804462)
chr7 (13-147)||(18567397-18567531)
chr7 (13-147)||(31435418-31435552)
chr7 (67-147)||(1049699-1049779)
chr7 (13-57)||(26804448-26804492)
chr7 (39-88)||(40946167-40946216)
chr7 (13-94)||(42006404-42006484)
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-140)||(2670-2802)
[»] scaffold0140 (2 HSPs)
scaffold0140 (34-181)||(21915-22062)
scaffold0140 (34-181)||(24190-24337)
[»] scaffold0025 (2 HSPs)
scaffold0025 (13-173)||(69665-69825)
scaffold0025 (64-173)||(73427-73536)
[»] scaffold0472 (1 HSPs)
scaffold0472 (34-181)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (13-90)||(29001-29078)
scaffold0068 (117-181)||(28941-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (8-180)||(14768-14941)
[»] scaffold0339 (1 HSPs)
scaffold0339 (8-55)||(3872-3919)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 51015208 - 51015042
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  51015208 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctc 51015109  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctca 179  Q
    ||||||||||||||||||||||||| |||||||||  |||| ||||||||||| ||||||| |||||    
T  51015108 catcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 11006607 - 11006781
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  11006607 ccaaaaatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattgaa 11006706  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcat-aaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||  || |||||||||||||  ||||| ||| ||||||| ||||||| |||||||    
T  11006707 acctccatcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 9176862 - 9177035
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  9176862 ccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaa 9176961  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||||||||||  || ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  9176962 acctccatcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 37089745 - 37089906
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||| ||    
T  37089745 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatc 37089844  T
Q  113 -catcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
     |||||||||||||||||||||||||||||||||||  |||| ||||||||||| |||||||    
T  37089845 tcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaa 37089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 16932213 - 16932360
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  16932213 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 16932312  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  16932313 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 9174512 - 9174684
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||    
T  9174512 ccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcctaataaactaaa 9174611  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||| ||||||||| ||| ||||||||||||  ||||  || ||||||| ||||||| |||||||    
T  9174612 acctccatcgtgctacgttgcctagccgtcgtgccacgattctgca-gaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 22783170 - 22783319
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22783170 gccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22783269  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcacatt 183  Q
     ||||| |||||||  |||| ||| ||||||| ||||||| |||||||||    
T  22783270 tatcgtaccacgattctgcagaaacctgattttaagttaactctcacatt 22783319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 24888758 - 24888598
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  24888758 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 24888660  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    | ||||||||||||||||| ||||||||||||| ||  |||| ||||||||||| |||||||    
T  24888659 caatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaa 24888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 16934572 - 16934716
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 138  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||  ||| |||    
T  16934572 cgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccatgttgcccagccgtcg 16934671  T
Q  139 tgccacgatcatgcataaatctgatttgaagttaaatctcacatt 183  Q
    |||||||||  |||| ||| ||||||| ||||||| |||||||||    
T  16934672 tgccacgattctgcagaaacctgattttaagttaactctcacatt 16934716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 36919971 - 36920125
Alignment:
Q  26 tatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacg 124  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||    
T  36919971 tattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaattgaaacctccaatcgtgccacg 36920069  T
Q  125 ttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||  ||||||||||||||||  ||||  || ||||||| ||||||| |||||||    
T  36920070 ttgcccagccatcgtgccacgattttgca-gaacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 22803104 - 22803238
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  22803104 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgagccacgatttttccagtgcctttcctc-aaaactgaaacctc 22803202  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||||||  |||||||| |||||||    
T  22803203 caatcgtgccacgttgcccagccatcgtaccacgat 22803238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 36921860 - 36922036
Alignment:
Q  7 tccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 106  Q
    ||||| |||| |||| ||||||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36921860 tccaaaaatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaactga 36921958  T
Q  107 aacctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcacatta 184  Q
    ||||||| ||||||||| ||||||  |||||||| |||||||  ||||  || ||||||| ||||||| ||||||||||    
T  36921959 aacctccaatcgtgccatgttgcccagccatcgtaccacgattttgca-gaacctgattttaagttaactctcacatta 36922036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 22044760 - 22044896
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc--aaaaactgaaacc 110  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  22044760 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacc 22044859  T
Q  111 tccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||||||| | | |||||||||||||    
T  22044860 tccatcgtgccacgttgcccttcaatcgtgccacgat 22044896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 38409161 - 38408993
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  38409161 aatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 38409063  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||| ||||  || |||||||||||||  |||| |||||| |||| ||||||| |||||||    
T  38409062 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 5637839 - 5638006
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| |||| || ||||||| | ||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  5637839 aatacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatcccatcgtgacatgatttttccagtgccttgcctc-aaaactgaaacctc 5637937  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||||  || |||||||||||||   ||| ||| ||||||| ||||||| |||||||    
T  5637938 catcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 31849970 - 31850101
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  31849970 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccaagatttttccagtgccttgcc-ccaaaactgaaacctc 31850068  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccac 144  Q
    | ||||||||||||||||  || ||||||||||    
T  31850069 caatcgtgccacgttgcccagcaatcgtgccac 31850101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 22780805 - 22780952
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22780805 gccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22780904  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
     ||||| |||||||  |||| ||| ||||||| ||||||| |||||||    
T  22780905 tatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 3824939 - 3825112
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| |  |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||    
T  3824939 ccaaaaatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgaccccattgtgccatgatttttccagtgctttgcctc-aaaactgaa 3825037  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||| ||||||||| ||||||  ||||||||| ||||||  |||| ||| ||||||| ||||||| |||||||    
T  3825038 acctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 11008958 - 11009075
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcct-caaaaactga 106  Q
    |||| ||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  11008958 ccaaaaatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaaattga 11009057  T
Q  107 aacctccatcgtgccacg 124  Q
    ||||||||| ||||||||    
T  11009058 aacctccattgtgccacg 11009075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 7941251 - 7941133
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||  |||| ||| ||||    
T  7941251 ccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 7941152  T
Q  163 tttgaagttaaatctcaca 181  Q
    ||| ||||||| |||||||    
T  7941151 ttttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 11434887 - 11434769
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||  |||| ||| ||||    
T  11434887 ccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctga 11434788  T
Q  163 tttgaagttaaatctcaca 181  Q
    ||| ||||||| |||||||    
T  11434787 ttttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 18847067 - 18846923
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatc 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| | ||   | |||    
T  18847067 cgcaccatcgtgccacgatgcgaccccatcgtaccacgatttttccagtaccttgcctc-aaaactgaaacctccaatcgtgccacgattcccaacaatc 18846969  T
Q  138 gtgccacgatcatgc--ataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||  |||  | ||||||||||| ||||||| |||||||    
T  18846968 gtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 5198382 - 5198266
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||||||| || ||||||| |||  ||||| |||    
T  5198382 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagagctttgcctc-aaacttgaaatctc 5198284  T
Q  113 c-atcgtgccacgttgcc 129  Q
    | ||||||||||||||||    
T  5198283 caatcgtgccacgttgcc 5198266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 48486286 - 48486147
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| ||||||| |||||||| |||||||  || ||||||||||||||||||    ||||||| |||||||| |||||||||    
T  48486286 ccaaaaatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaa 48486188  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| |||||||||||||||   ||||||||||||||||    
T  48486187 acctccaatcgtgccacgttgctcagccatcgtgccacgat 48486147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 9148192 - 9148088
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 141  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||||| |||| |||||||||||  || ||||| |    
T  9148192 ccatcgtgccacgatgcaaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgcgccacgttgcccagcaatcgtac 9148094  T
Q  142 cacgat 147  Q
    ||||||    
T  9148093 cacgat 9148088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 24880419 - 24880299
Alignment:
Q  7 tccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 106  Q
    ||||| |||| |||| ||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| |||    ||||||| |||||||| ||||||||    
T  24880419 tccaaaaatacgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaatcccatcgtgccgcgaaaaatccagtgacttgcctc-aaaactga 24880321  T
Q  107 aacctcca-tcgtgccacgttg 127  Q
    |||||||| |||||||||||||    
T  24880320 aacctccattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 22801262 - 22801345
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||   |||||||||||||||    
T  22801262 ccatcgtgccacgatttttccagttccttgcctc-aaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgat 22801345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 22047055 - 22047135
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 94  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  22047055 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgcca-gatttttccagtgccttgc 22047135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 52942869 - 52942973
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 141  Q
    ||||||||||||| || ||||||||||||||||||  | | ||||| |||||||| ||| ||||||||||| ||||||||||||||||   |||||||||    
T  52942869 ccatcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctc-aaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgc 52942967  T
Q  142 cacgat 147  Q
    ||||||    
T  52942968 cacgat 52942973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 619813 - 619932
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| || |||| |||||||| |||||||| |||||||||||||||||||||    |||| || |||||||| |||||||||    
T  619813 ccaaaaatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgaccccatcgtgccacgaaaaatccaatgacttgcctc-aaaactgaa 619911  T
Q  108 acctcc-atcgtgccacgttg 127  Q
    || ||| || |||||||||||    
T  619912 acatccaattgtgccacgttg 619932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 52942818 - 52942881
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacg 76  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| || |||||||||||||||||    
T  52942818 aatatgtttatgttattcgctgccagcgcatcatcgtgccacgttgtgaccccatcgtgccacg 52942881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 24878956 - 24878836
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| | ||||| || |||||||||||||| ||| | |||||||||||||||    ||||||| ||||| || |||||||||    
T  24878956 ccaaaaatacgtttctgttattcgatgccagcgtaccatcgtgccacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcgtc-aaaactgaa 24878858  T
Q  108 acctcc-atcgtgccacgttgc 128  Q
    |||||| |||||||||||||||    
T  24878857 acctccaatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 40091786 - 40091920
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| ||||| |||||| |||| ||  ||||||||||| |||| |||||||||||| || ||||||||||||| || ||| | || |||||||||| |||    
T  40091786 aatacgtttacgttattcgctgtcagtgcaccatcgtgtcacgttgcgaccccatcatggcacgatttttccaatggcttacttc-aaaactgaaatctc 40091884  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||| ||   ||| |||||||||||    
T  40091885 caatcgtgccacgttacccaaccaccgtgccacgat 40091920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 22048492 - 22048541
Alignment:
Q  98 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||||    
T  22048492 aaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgat 22048541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 47274694 - 47274647
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacg 55  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  47274694 ccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacg 47274647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 16689331 - 16689380
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  16689331 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 16689380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 8529060 - 8529012
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagt 87  Q
    |||||||||||| ||||||||| |  ||||||| |||||||||||||||    
T  8529060 cgcaccatcgtggcacgatgcggcttcatcgtggcacgatttttccagt 8529012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 11434917 - 11434873
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||    
T  11434917 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgat 11434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22801232 - 22801276
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| |||| ||||||||||||||  |||||||||||||||||||    
T  22801232 aatacgtttctgttatttgctgccggcgcaccatcgtgccacgat 22801276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 19502377 - 19502542
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19502377 ccaaaaatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactgaa 19502476  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||| ||||||| |||||||    
T  19502477 acctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaa 19502542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 27104683 - 27104523
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||||||||||||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104683 aatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 27104584  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    ||||||||||||||||| | | |||||||||||||  |||| ||||||||||| |||||||    
T  27104583 catcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgattttaagttaa 27104523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 19504720 - 19504885
Alignment:
Q  17 tgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatc 116  Q
    ||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  19504720 tgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctccatc 19504819  T
Q  117 gtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcacat 182  Q
    ||||||||||||||||||||||||||| |||  |||  ||| ||||||| ||||||| | ||||||    
T  19504820 gtgccacgttgccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcacat 19504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 24162604 - 24162752
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc-aaaaactgaaacctccatcgtgccacgttgccttg 132  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  24162604 gccagcgcacaatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaa 24162703  T
Q  133 ccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||| ||||||||||  |||| |||  |||||| ||||||| |||||||    
T  24162704 ccattgtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 36559211 - 36559358
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  36559211 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 36559310  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  36559311 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 21521061 - 21521200
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||| || |||||||||    
T  21521061 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcacgatttttccagtggcttgcttc-aaaactgaa 21521159  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  21521160 acctccaatcgtgccacgttgcccagccatcgtgccacgat 21521200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 36561539 - 36561677
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||  |  |||  ||| |||||||    
T  36561539 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgtgaagcccagccgtcgtgcc 36561638  T
Q  143 acgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||  |||| ||| ||||||| ||||||| |||||||    
T  36561639 acgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 45332528 - 45332675
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  45332528 gccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 45332627  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  45332628 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 42064399 - 42064265
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  42064399 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 42064301  T
Q  113 ca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    || |||| ||||||||||  || |||||||||||||    
T  42064300 cagtcgtaccacgttgcccagcaatcgtgccacgat 42064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 6259181 - 6259320
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||||||  | |||| |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||| |||||||||    
T  6259181 ccaaaaatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatcccatcgtgccacgatttttccagtgactttcctc-aaaactgaa 6259279  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    || ||| || ||||||||||||   ||||||||||||||||    
T  6259280 acatccaatagtgccacgttgcacagccatcgtgccacgat 6259320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 13910415 - 13910491
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgc 89  Q
    ||||||||| |||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13910415 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgc 13910491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 43623968 - 43624077
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||  |||||||||||| |||  |||| ||| ||||    
T  43623968 ccatcgtgccacgattttttcagtgccttgcctc-aaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcagaaacctga 43624066  T
Q  163 tttgaagttaa 173  Q
    ||| |||||||    
T  43624067 ttttaagttaa 43624077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 22407775 - 22407914
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| ||||||| ||||||||||||||||| || || ||||||||||||| |||||| || || |||||||| |||||||||    
T  22407775 ccaaaaatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatcccatcgtgccacaattttttcactgacttgcctc-aaaactgaa 22407873  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    || ||| ||||||||| ||| || | | |||||||||||||    
T  22407874 acatccaatcgtgccatgttacccttcaatcgtgccacgat 22407914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36561488 - 36561532
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  36561488 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 36561532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 6264546 - 6264611
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 129  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  6264546 ccatcgtgccacgatttttccagtgacttgcctc-aaaactgaaacatccaatcatgccacgttgcc 6264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 40032468 - 40032552
Alignment:
Q  63 cccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||    ||||||| |||| ||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  40032468 cccatcgtgccacgaaaaatccagtgacttgtctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgat 40032552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 43623938 - 43623982
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  43623938 aatacgtttatgttatttgctgccagcgcaccatcgtgccacgat 43623982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 36561518 - 36561553
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgat 78  Q
    ||||||||||||||||||||||||||||||||||||    
T  36561518 ccatcgtgccacgatgcgaccccatcgtgccacgat 36561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 20302372 - 20302198
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 106  Q
    |||| ||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20302372 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaaactga 20302273  T
Q  107 aacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||||||||||| |||| ||||  |||| ||||||||||| ||||||| |||||||    
T  20302272 aacctccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 51752278 - 51752104
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 106  Q
    |||| |||| |||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  51752278 ccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggccccatcgtgccacgatttttccagtgccttgcctcaaaaaactga 51752179  T
Q  107 aacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||||||||||   |||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  51752178 aacctccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 13761750 - 13761577
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| || |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13761750 ccaaaaatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 13761651  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||| ||||||||||||  ||||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  13761650 acctccatcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 51749952 - 51749778
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 106  Q
    |||| |||| |||| ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51749952 ccaaaaatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactga 51749853  T
Q  107 aacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||| ||||||||||   |||||||||||||||  |||| |||  |||||| ||||||| |||||||    
T  51749852 aacctccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 6823797 - 6823661
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 106  Q
    |||| |||| |||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6823797 ccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcatgccacgatttttccagtgccttgcctcaaaaaactga 6823698  T
Q  107 aacctccatcgtgccacgttgccttgccatcgtgcca 143  Q
    |||||||||||||||||||||||   |||||||||||    
T  6823697 aacctccatcgtgccacgttgcccaaccatcgtgcca 6823661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 10400196 - 10400369
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||  ||||    
T  10400196 ccaaaaatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatatttccagtgctttgcctc-aaacttgaa 10400294  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||| ||||||||||||||||  || |||||||||||||   ||| ||| ||||||| ||||||| |||||||    
T  10400295 acctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 16226034 - 16225895
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||   |    
T  16226034 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccaac 16225935  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    | ||||||||||||  |||| ||| ||||||| |||||||    
T  16225934 cgtcgtgccacgattctgcagaaacctgattttaagttaa 16225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28840586 - 28840452
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  28840586 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacaatttttccagtaccttgcct-aaaaactgaaacctc 28840488  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||||||||||||||||||||||||    
T  28840487 caatcgtgccacgttgccttgccatcgtgccacgat 28840452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 47179570 - 47179428
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||  ||| |||    
T  47179570 cgcaccatcgtgccacgatgagaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcg 47179471  T
Q  139 tgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||  |||| ||| ||||||| ||||||| |||||||    
T  47179470 tgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 15823460 - 15823320
Alignment:
Q  7 tccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 106  Q
    ||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||  |||    
T  15823460 tccaaaaatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttctagtgctttgcctc-aaacttga 15823362  T
Q  107 aacctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  15823361 aacctccaatcgtgccacgttgcccagccatcgtgccacgat 15823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28842401 - 28842267
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28842401 aatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcct-aaaaactgaaacctc 28842303  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | |||||||||||| |||||||||||||||||||||    
T  28842302 caatcgtgccacgtagccttgccatcgtgccacgat 28842267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 47177224 - 47177078
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  |     
T  47177224 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcc-caaaaactaaaacctccatcgtgccacgttgcccagt 47177126  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  47177125 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 6822893 - 6822775
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||  |||| ||| ||||    
T  6822893 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 6822794  T
Q  163 tttgaagttaaatctcaca 181  Q
    ||| ||||||| |||||||    
T  6822793 ttttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 23783376 - 23783238
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||  |||||||    
T  23783376 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgcc 23783277  T
Q  143 acgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||  |||| ||| ||||||| ||||||| |||||||    
T  23783276 acgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 20291386 - 20291279
Alignment:
Q  76 gatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaa 174  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||| |||||||     
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaac 20291287  T
Q  175 tctcacat 182  Q
    ||||||||    
T  20291286 tctcacat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 13214994 - 13214855
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||||||||||| | ||||||||||||||| ||| | |||||| ||||||||    ||||||| |||||||| |||||||||    
T  13214994 ccaaaaatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatcccatcatgccacgaaaaatccagtgacttgcctc-aaaactgaa 13214896  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| ||||||||||||||||   |||||||||||||||    
T  13214895 acctccaatcgtgccacgttgcccaaccatcgtgccacgat 13214855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 16231458 - 16231375
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||||    
T  16231458 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgat 16231375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 3579991 - 3580125
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| ||||||| |||| || |||| ||||||||||||||||| ||| | |||| ||| |||||||||||||| || |||||||| | ||||||||| ||    
T  3579991 aatacgtttatgatattcgccgccagcgcaccatcgtgccacgttgcaatcccaccgtaccacgatttttccaatgacttgcctc-ataactgaaacatc 3580089  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | || ||| ||||||||| ||| |||||||||||||    
T  3580090 caattgtgtcacgttgccctgcaatcgtgccacgat 3580125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 50767747 - 50767703
Alignment:
Q  182 ttaattaacttttatatagttagagaaagatgtttgtgaatttac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50767747 ttaattaacttttatatagttagagaaagatgtttgtgaatttac 50767703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 41646834 - 41646717
Alignment:
Q  7 tccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 106  Q
    ||||| ||||||||| ||||||| |||||||  |||||||||||||||| ||| | |||| ||||||||||    ||||||| |||||||| ||||||||    
T  41646834 tccaaaaatatgtttctgttattcgctgccagtgcaccatcgtgccacgttgcaatcccaccgtgccacgaaaaatccagtgacttgcctc-aaaactga 41646736  T
Q  107 aacctc-catcgtgccacg 124  Q
    ||||||  |||||||||||    
T  41646735 aacctctaatcgtgccacg 41646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 23783406 - 23783362
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 78  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  23783406 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 23783362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 30790793 - 30790882
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgc 128  Q
    ||||||||||||||||  ||||| |||||||||||||| ||||||||||| ||||| || | ||||||||| ||| |||||||||| ||||    
T  30790793 cgcaccatcgtgccacattgcgatcccatcgtgccacgttttttccagtgacttgcttc-ataactgaaacatccaatcgtgccacattgc 30790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 28207444 - 28207500
Alignment:
Q  18 gtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgcca 74  Q
    |||||||||||| || |||| ||||||||||||||||| || |||||||||||||||    
T  28207444 gtttatgttattcgccgccagcgcaccatcgtgccacgttgtgaccccatcgtgcca 28207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 47451488 - 47451405
Alignment:
Q  99 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatca-tgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||| ||||||||| |||||  ||||||||||||||||   |||| ||||||||||||||||||| |||||||    
T  47451488 aaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 39462426 - 39462310
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| |||||||  |||| | ||||||||||||||||  ||| | |||||||||||||||    |||| || |||||||| ||||||||||||||    
T  39462426 aatacgtttctgttattcactgcaagcgcaccatcgtgccacattgcaatcccatcgtgccacgaaaaatccactgacttgcctc-aaaactgaaacctc 39462328  T
Q  113 -catcgtgccacgttgcc 129  Q
      ||||||||||||||||    
T  39462327 taatcgtgccacgttgcc 39462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 49687418 - 49687335
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| | |||||||||||||  |||||| |||||||||    
T  49687418 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccatcatgccacgat 49687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 13449947 - 13449996
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  13449947 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 13449996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 38925915 - 38925964
Alignment:
Q  99 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||| |||||||||||||||  |||||||| |||||||    
T  38925915 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgat 38925964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 14098337 - 14098385
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacga 56  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||| ||||    
T  14098337 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgcaacga 14098385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 47451556 - 47451508
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcga 61  Q
    |||| |||| ||||||| |||| || |||||||||||||||||||||||    
T  47451556 aatacgtttctgttattcgctgtcagcgcaccatcgtgccacgatgcga 47451508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 49687453 - 49687405
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacga 56  Q
    |||| |||| |||||||||||| |||| || ||||||||||||||||||    
T  49687453 ccaaaaatacgtttatgttattcgctgtcagcgcaccatcgtgccacga 49687405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 22114669 - 22114842
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22114669 ccaaaaatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaactgaa 22114768  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||   |||||||||||||||  | || ||| ||||||| ||||||| |||||||    
T  22114769 acctccatcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 6063866 - 6064006
Alignment:
Q  41 caccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtg 140  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||    
T  6063866 caccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtg 6063965  T
Q  141 ccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||  |||||||| ||||||| ||||||| |||||||    
T  6063966 ccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 18099560 - 18099707
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttg 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||  |    
T  18099560 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgtcttgcctc-aaaactgaaacctccaatcgtgccacgttgcccag 18099658  T
Q  133 ccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  18099659 ccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 5191541 - 5191374
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  5191541 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 5191443  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcac 180  Q
    | ||||||||||| ||||  || |||||||||||||  |||| ||||||||||| ||||||| ||||||    
T  5191442 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 50493823 - 50493675
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  50493823 gccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 50493724  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcacat 182  Q
     |||||||||||||  |||| ||| ||||||| ||||||| ||||||||    
T  50493723 tatcgtgccacgattctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 38210214 - 38210067
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  38210214 gccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 38210115  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  38210114 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 10192401 - 10192513
Alignment:
Q  52 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatg 151  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||   |    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccg 10192499  T
Q  152 cataaatctgattt 165  Q
    ||||||||||||||    
T  10192500 cataaatctgattt 10192513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 53896613 - 53896754
Alignment:
Q  40 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgt 139  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||  || |||||    
T  53896613 gcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagcaatcgt 53896712  T
Q  140 gccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||  |||| ||| ||||||| ||||||| |||||||    
T  53896713 gccacgattctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 5899608 - 5899476
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcctt 131  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |    
T  5899608 ctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatccatcgtgccacgttgccct 5899509  T
Q  132 gccatcgtgccacgatcatgcataaatctgatt 164  Q
     | ||||||||| ||| ||||| ||| ||||||    
T  5899508 tcaatcgtgccatgattatgcagaaacctgatt 5899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 10956396 - 10956505
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10956396 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcc-ccaaaactgaaacctc 10956494  T
Q  113 c-atcgtgcca 122  Q
    | |||||||||    
T  10956495 caatcgtgcca 10956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 10085481 - 10085593
Alignment:
Q  52 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatg 151  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||   |    
T  10085481 cacgatgtgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccg 10085579  T
Q  152 cataaatctgattt 165  Q
    ||||||||||||||    
T  10085580 cataaatctgattt 10085593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 18097291 - 18097422
Alignment:
Q  50 gccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatc 148  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||     
T  18097291 gccactatgcgaccccatcgtgccacgatttttcctatgccttgcctc-aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt 18097389  T
Q  149 atgcataaatctgatttgaagttaaatctcaca 181  Q
     |||| ||| ||||||| ||||||| |||||||    
T  18097390 ttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 25388746 - 25388654
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 124  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  25388746 ctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacg 25388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 38889875 - 38889792
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38889875 ccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtaccacgat 38889792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 5886133 - 5886039
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgtt 126  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||    
T  5886133 ctgccagcgcaccatcgtaccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacatccatcgtgccacgtt 5886039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 32264407 - 32264546
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||| | |||||||||||||||    ||||||| ||||||||||||||||||    
T  32264407 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaa 32264506  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| ||||||||||||| ||  ||||||||||||||||    
T  32264507 acctccaatcgtgccacgtt-cccagccatcgtgccacgat 32264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 1321329 - 1321195
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  1321329 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 1321231  T
Q  113 -catcgtgccacgttgccttgccatcgtgccacgat 147  Q
      ||||||||||||||||  || |||||||||||||    
T  1321230 taatcgtgccacgttgcccagcaatcgtgccacgat 1321195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 5522984 - 5523118
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| |    
T  5522984 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtaccttgcctc-aaaactgaaaccac 5523082  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||| ||||||  || ||| |||||||||    
T  5523083 caatcgtgccatgttgcccagcaatcttgccacgat 5523118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 11163008 - 11162925
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  11163008 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgat 11162925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 26720436 - 26720302
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  26720436 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 26720338  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||| |||||||||||   ||||||||||||||||    
T  26720337 caatcctgccacgttgctcagccatcgtgccacgat 26720302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 35777280 - 35777163
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||  ||||||||||||  |||| |||||| ||    
T  35777280 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcagaaatctaat 35777181  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  35777180 tttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 10958692 - 10958767
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10958692 aatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 10958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 11170260 - 11170179
Alignment:
Q  66 atcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || | |||||||||||    
T  11170260 atcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctccatcgtgccacgttgcccagcaaccgtgccacgat 11170179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 6719532 - 6719651
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacct---ccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatct 160  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||   | ||||||||||| |||| | | ||||||||||||| | ||| ||| ||    
T  6719532 ccatcgtgccacgatttttccagtgcattgcct-aaaaactgaaacctctccaatcgtgccacgatgcccttcaatcgtgccacgattaagcagaaacct 6719630  T
Q  161 gatttgaagttaaatctcaca 181  Q
    ||||| ||||||| |||||||    
T  6719631 gattttaagttaattctcaca 6719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 7606880 - 7606963
Alignment:
Q  98 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||  |||| ||| ||||||| ||||||| |||||||    
T  7606880 aaaaactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 3859421 - 3859350
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 79  Q
    |||| |||| |||||| ||||| || |||| |||||||||||||||||||| ||||||||||||||||||||    
T  3859421 ccaaaaatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatt 3859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 6066195 - 6066254
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccac 123  Q
    ||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||    
T  6066195 ccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaaacctccatcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 24177167 - 24177033
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| ||||||||| || ||  ||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||| ||||| || | |||||||||  |    
T  24177167 aatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatcccatcgtgccacattttttccagtgacttgcttc-agaactgaaacaac 24177069  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | |||||||||||||||| ||| | |||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgat 24177033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 45882832 - 45882752
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||| |||| |||| ||||||| | || || ||||||||||||||||| ||| | ||||||||| ||||||||||||||||    
T  45882832 ccaaaaataggtttctgttattcgttgtcagcgcaccatcgtgccacgttgcaatcccatcgtggcacgatttttccagtg 45882752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 35777314 - 35777266
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  35777314 ccaaaaatatgtttatgtt-tttgctgccagcgcaccatcgtgccacgat 35777266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 3859365 - 3859315
Alignment:
Q  133 ccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcacatt 183  Q
    ||||||||||||||| ||||| ||| ||||||| ||||||| |||||||||    
T  3859365 ccatcgtgccacgattatgcagaaacctgattttaagttaactctcacatt 3859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 4308676 - 4308725
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  4308676 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 4308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 6719497 - 6719546
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| ||||||||| ||||||| || |||| |||||||||||||||||||    
T  6719497 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 6719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10084762 - 10084807
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 58  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10084762 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10084807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10191682 - 10191727
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 58  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10191682 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10191727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 38889910 - 38889861
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| ||||||||| ||||||| || |||| |||||||||||||||||||    
T  38889910 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 38889861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 12907 - 13054
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||     
T  12907 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttga 13006  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  13007 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 14507546 - 14507716
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc--aaaaactgaaacc 110  Q
    ||||||||| |||| || |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||  |||||||||||||    
T  14507546 aatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgaccccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacc 14507645  T
Q  111 tccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||||||||  ||||||||||||||||  |||| ||||||||||| ||||||| |||||||    
T  14507646 tccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 19227780 - 19227914
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19227780 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctc 19227879  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||| ||||||||||||   |||||||||||||||    
T  19227880 catcatgccacgttgcccaaccatcgtgccacgat 19227914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 26068735 - 26068882
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  26068735 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcatgccacgttgccttgc 26068834  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  26068835 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 8995423 - 8995289
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8995423 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 8995325  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||||||  ||||||||||||||||    
T  8995324 caatcgtgccacgttgcccagccatcgtgccacgat 8995289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 9019870 - 9019736
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9019870 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 9019772  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||||||  ||||||||||||||||    
T  9019771 caatcgtgccacgttgcccagccatcgtgccacgat 9019736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 26066464 - 26066611
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||    
T  26066464 gccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctccatcgtgccacgttgccttgc 26066563  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  | || ||| ||||||| ||||||| |||||||    
T  26066564 cgtcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 33308832 - 33308685
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33308832 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33308733  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  33308732 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 33311101 - 33310954
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33311101 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33311002  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  33311001 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 29755132 - 29755279
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  29755132 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 29755231  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  29755232 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 11983400 - 11983558
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  11983400 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg-cttacctc-acaactgaaacctc 11983497  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    |||||| ||| ||||||   ||||||| |||||||  |||| ||| ||||||| |||||||    
T  11983498 catcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgattttaagttaa 11983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 4816639 - 4816749
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4816639 aatatgtttctgtt-tttgctaccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 4816736  T
Q  113 c-atcgtgccacg 124  Q
    | |||||||||||    
T  4816737 caatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 15530512 - 15530627
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 130  Q
    |||||| | |||||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||||| |||  |||||||||| || |||||||||| ||     
T  15530512 ctgccagcacaccatcgtgccacgatgcggccccatcgtaccacgaattttcgagtgctttgcctc-aaacttgaaacctccaattgtgccacgttaccc 15530610  T
Q  131 tgccatcgtgccacgat 147  Q
     ||||||||||||||||    
T  15530611 agccatcgtgccacgat 15530627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 30729194 - 30729284
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 98  Q
    |||| |||| |||| ||||||| ||||||| ||||| ||||||||||| || |||||||||||| |||||  ||||||||| |||||||||    
T  30729194 ccaaaaatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 30729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 26084867 - 26084818
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||||    
T  26084867 cgcaccatcgtgccacgatgcgattcaatcgtggcacgatttttccagtg 26084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 32279910 - 32279845
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 129  Q
    |||||||||||||| |||||||| | |||||||| | ||||||||| ||| ||||||||||||||||    
T  32279910 ccatcgtgccacgacttttccagcgacttgcctc-agaactgaaacatccaatcgtgccacgttgcc 32279845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 15541511 - 15541596
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 98  Q
    ||||||||| || |||| ||||||| || |||||||||||||| ||||| | ||||||| || ||  ||||||||| | |||||||    
T  15541511 aatatgtttctgctattcgctgccagcgtaccatcgtgccacgttgcgatctcatcgtggcatgaaatttccagtgacgtgcctca 15541596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 34477485 - 34477632
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  34477485 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 34477584  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||  |||| |||  |||||| ||||||| |||||||    
T  34477585 catcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 38882018 - 38881879
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38882018 ccaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactaaa 38881919  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||||||||||  || |||||||||||||    
T  38881918 acctccatcgtgccacgttgcccagcaatcgtgccacgat 38881879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 2174797 - 2174680
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||    
T  2174797 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 2174698  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  2174697 tttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 31544971 - 31544798
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  31544971 ccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 31544872  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||  || |||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  31544871 acctccatcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 10749652 - 10749505
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10749652 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10749553  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  10749552 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 4236519 - 4236378
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 130  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||     
T  4236519 ctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgccc 4236421  T
Q  131 tgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
     ||||||||||||| ||  |||| ||||||||||| |||||||    
T  4236420 agccatcgtgccacaattctgcagaaatctgattttaagttaa 4236378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 31542615 - 31542442
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  31542615 ccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 31542516  T
Q  108 acctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||||||||||||||||||  || |||||| ||||||  |||| ||| ||||||| ||||||| |||||||    
T  31542515 acctccatcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 10757107 - 10756960
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10757107 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10757008  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | |||||| |||||  |||| ||| ||||||| ||||||| |||||||    
T  10757007 cgtcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 15354918 - 15355065
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15354918 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15355017  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  15355018 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 15357194 - 15357341
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15357194 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15357293  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  15357294 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 16776065 - 16775931
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  16776065 aatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 16775967  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | |||||| |||||||||||||||||||||||||||    
T  16775966 caatcgtgtcacgttgccttgccatcgtgccacgat 16775931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 34479855 - 34479972
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||  |||| ||| |||||    
T  34479855 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgat 34479954  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  34479955 tttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 39797966 - 39797849
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||| ||| |||||    
T  39797966 ccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcagaaacctgat 39797867  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  39797866 tttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 25921874 - 25921993
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaa-actgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |   |||||||||||||||  |||| ||| ||||    
T  25921874 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctga 25921973  T
Q  163 tttgaagttaaatctcacat 182  Q
    ||| ||||||| ||||||||    
T  25921974 ttttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 31179807 - 31179897
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||    
T  31179807 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacg 31179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 23664981 - 23664833
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23664981 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23664882  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcacat 182  Q
      ||||||||||||  |||| ||| ||||||| ||||||| ||||||||    
T  23664881 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 23793606 - 23793754
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23793606 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23793705  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcacat 182  Q
      ||||||||||||  |||| ||| ||||||| ||||||| ||||||||    
T  23793706 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 23667256 - 23667109
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23667256 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23667157  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  23667156 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 21684832 - 21684909
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 90  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684832 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 21684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 659829 - 659747
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  659829 ccatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgttgcctagccatcgtgccacgat 659747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 38960487 - 38960604
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| |   |||  ||| ||||||||||||  |||| ||| |||||    
T  38960487 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgtgcagaaacctgat 38960586  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  38960587 tttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 659850 - 659929
Alignment:
Q  46 tcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgtt 126  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  659850 tcgtgccacaatgcgacctcatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 21947940 - 21947804
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| ||||||||   |||||||||||||| ||| | ||||||||||||||     ||||||| ||| |||||||| |||||    
T  21947940 ccaaaaatatgtttctgttattcgctgccac---accatcgtgccacgttgcaatcccatcgtgccacgtaaagtccagtgacttacctcaaaa-ctgaa 21947845  T
Q  108 acctcca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||| ||||| |||||||||| ||||||||||||||||    
T  21947844 acctccaatcgtgtcacgttgcctagccatcgtgccacgat 21947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 31466379 - 31466496
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc-catcgtgccacgttgccttgccatcgtgccacga-tcatgcataaatctg 161  Q
    ||||||||||| ||||||||||||| |||||||| | ||||||||| || ||||||||||||||||| | | |||||||||||| || |||| ||| |||    
T  31466379 ccatcgtgccaagatttttccagtgacttgcctc-ataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgca-aaacctg 31466476  T
Q  162 atttgaagttaaatctcaca 181  Q
    |||| ||||||| |||||||    
T  31466477 attttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 18186489 - 18186589
Alignment:
Q  83 ccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||  |||| |||  |||||| ||||||| |||||||    
T  18186489 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcaca 18186587  T
Q  182 tt 183  Q
    ||    
T  18186588 tt 18186589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 2818729 - 2818812
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcctagccatcgtgccacgat 2818812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 20507828 - 20507967
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| ||||| | |||||| |||||||| | ||| | |||||||||||||||    |||| || |||||||| |||||| ||    
T  20507828 ccaaaaatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatcccatcgtgccacgaaaaatccaatgacttgcctc-aaaactaaa 20507926  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| ||||||| ||||||||   | |||||||||||||    
T  20507927 acctccaatcgtgctacgttgcccaactatcgtgccacgat 20507967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 20504316 - 20504418
Alignment:
Q  45 atcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgcca 143  Q
    ||||||||||| ||| | |||||||||||||||    |||| || |||||||||||| || ||||||||| |||||||||||||||  || |||||||||    
T  20504316 atcgtgccacgttgcaatcccatcgtgccacgaaaaatccattgacttgcctcaaaa-ctaaaacctccaatcgtgccacgttgcccagctatcgtgcca 20504414  T
Q  144 cgat 147  Q
    ||||    
T  20504415 cgat 20504418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  117 gtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||  ||||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 39798001 - 39797956
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgcca 53  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  39798001 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgcca 39797956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 39854366 - 39854317
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||||||||||||||||||||  | | |||| ||||||||||||||||    
T  39854366 cgcaccatcgtgccacgatgcgattcaaccgtgacacgatttttccagtg 39854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 42238096 - 42238047
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  42238096 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 42238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 1240219 - 1240171
Alignment:
Q  40 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    ||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  1240219 gcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 1240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 4409946 - 4409890
Alignment:
Q  32 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||| |||||||||||| |||||| ||| || || ||| ||||||||||||||||    
T  4409946 ctgccatcgcaccatcgtggcacgattcgatccaattgtggcacgatttttccagtg 4409890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 18812815 - 18812668
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  18812815 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 18812716  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  | || ||| ||||||| ||||||| |||||||    
T  18812715 cgtcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 43079494 - 43079347
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  43079494 gccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttgc 43079395  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  43079394 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 43081861 - 43081722
Alignment:
Q  42 accatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgc 141  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||| |||||||||| ||||||    
T  43081861 accatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccactttgccttgccgtcgtgc 43081762  T
Q  142 cacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    ||||||  |||| ||| ||||||| ||||||| |||||||    
T  43081761 cacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 27826950 - 27826816
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  27826950 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctc 27826851  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||  || |||||||||||||    
T  27826850 catcgtgccacgttgcccagcaatcgtgccacgat 27826816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 27829261 - 27829127
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  27829261 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctc 27829162  T
Q  113 catcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||  || |||||||||||||    
T  27829161 catcgtgccacgttgcccagcaatcgtgccacgat 27829127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 12517397 - 12517531
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  12517397 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtacattgcctc-aaaactgaaacctc 12517495  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | ||||||||||||||||||||||||||||||||||    
T  12517496 caatcgtgccacgttgccttgccatcgtgccacgat 12517531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 18810630 - 18810483
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||||||||||||||  ||    
T  18810630 gccagcgcaccatcgtgccacgatgtgaccccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctccatcgtgccacgttgcccagc 18810531  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  18810530 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 44720790 - 44720617
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  44720790 ccaaaaatatgtttctgtt-tttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaa 44720693  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgca-taaatctgatttgaagttaaatctcaca 181  Q
    |||||| | ||||||||  ||||  || ||| |||||||||  ||||  ||| ||||||| ||||||| |||||||    
T  44720692 acctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 14807716 - 14807556
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  14807716 aatacgtttatgtttttcgctgccagcgcaccaccgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 14807618  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    | |||||| |||||||||   ||||| |||||||||  |||| ||| ||||||| |||||||    
T  14807617 caatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctgattttaagttaa 14807556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 15067950 - 15067785
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| ||||||| ||||||||||||||||| ||||| ||||||||| || ||||||||||||| ||||| || |||||||||    
T  15067950 ccaaaaatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcatgatttttccagtggcttgcttc-aaaactgaa 15067852  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacga-tcatgcataaatctgatttgaagttaa 173  Q
    |||||| ||||||||| ||||||  |||||| |||||||| || |||| ||||||||||| |||||||    
T  15067851 acctccaatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctgattttaagttaa 15067785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 28251988 - 28252092
Alignment:
Q  43 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 141  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||| ||||| ||||||||||| ||||||||||    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgtaccacgttgcctagccatcgtgc 28252086  T
Q  142 cacgat 147  Q
    ||||||    
T  28252087 cacgat 28252092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 15072679 - 15072506
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||| |||| ||||| || |||||||||    
T  15072679 ccaaaaatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatcccatcgtgacacgatttttctagtggcttgcttc-aaaactgaa 15072581  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacga-tcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||| |||||| |||||||||  ||||||||| ||||| || ||||  |||||||||| ||||||| |||||||    
T  15072580 acctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgca-gaatctgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3886322 - 3886386
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctc-aaaaactgaaacctccatcgtgccacgttg 127  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  3886322 ccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttg 3886386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 4423952 - 4423869
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||  || || ||||||||||    
T  4423952 ccatcgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgat 4423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 28251937 - 28252002
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 78  Q
    |||| |||| |||| || ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  28251937 aatacgtttctgtttttcgctgccaacgcaccatcgtaccacgatgcgatcccatcgtgccacgat 28252002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3878490 - 3878322
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  3878490 aatacgtttctgttattcgctgccagcgtaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 3878392  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||||||  ||||||||||||||||  |||| ||||||||||| ||||||| |||||||    
T  3878391 caatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 1047356 - 1047503
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  1047356 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 1047455  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  1047456 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 2935217 - 2935070
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  2935217 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 2935118  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  2935117 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 9027540 - 9027687
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  9027540 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 9027639  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  9027640 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 22137025 - 22136878
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22137025 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 22136926  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  22136925 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 27306595 - 27306768
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| ||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||    
T  27306595 ccaaaaatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgaccccatcgtgccacgatttttccaatgacttgcctc-aaaactgaa 27306693  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcacat 182  Q
    |||||| |||||||||||||| |  ||||||||||||||||  |||| ||| || |||| ||||||| ||||||||    
T  27306694 acctccaatcgtgccacgttgtccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcacat 27306768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 40552052 - 40551905
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  40552052 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 40551953  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  40551952 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 35552 - 35413
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||| || |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||    
T  35552 ccaaaaatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaa 35454  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  35453 acctccaatcgtgccacgttgcctagcaatcgtgccacgat 35413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 44487 - 44348
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||  ||||    
T  44487 ccaaaaatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgctttgcgtc-aaacttgaa 44389  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    |||||| |||||||||| |||||  |  |||||||||||||    
T  44388 acctccaatcgtgccacattgcccagaaatcgtgccacgat 44348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 25542448 - 25542317
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  25542448 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctc 25542350  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccac 144  Q
    | ||||||||||||||||  || ||||||||||    
T  25542349 caatcgtgccacgttgcccagcaatcgtgccac 25542317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 22108014 - 22107867
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  22108014 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 22107915  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  22107914 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 40549774 - 40549627
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  40549774 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 40549675  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  40549674 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 40837144 - 40837261
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgat 163  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |   |||||||||||||||  |||| ||| |||||    
T  40837144 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcagaaacctgat 40837243  T
Q  164 ttgaagttaaatctcaca 181  Q
    || ||||||| |||||||    
T  40837244 tttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 26804462 - 26804345
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||||||||||||  || | ||| ||||    
T  26804462 ccatcgtgccacgatttttccactgccttgcctc-aaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtagaaacctga 26804364  T
Q  163 tttgaagttaaatctcaca 181  Q
    ||| ||||||| |||||||    
T  26804363 ttttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 18567531 - 18567397
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  18567531 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 18567433  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | |||||||||| |||||  || |||||||||||||    
T  18567432 caatcgtgccactttgcccagctatcgtgccacgat 18567397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 31435418 - 31435552
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  31435418 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 31435516  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    | |||||||||| |||||  || |||||||||||||    
T  31435517 caatcgtgccactttgcccagctatcgtgccacgat 31435552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 1049699 - 1049779
Alignment:
Q  67 tcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgat 147  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||  || |||||||||||||    
T  1049699 tcgtgccacgatttttccagtaccttgcttc-aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgat 1049779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 26804492 - 26804448
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 57  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||    
T  26804492 aatacgtttctgttatttgctgccagcgcaccatcgtgccacgat 26804448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 40946216 - 40946167
Alignment:
Q  39 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 88  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  40946216 cgcaccatcgtggcacgattcgatccaatcgtgacacgatttttccagtg 40946167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 42006484 - 42006404
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 94  Q
    |||| ||||||||||||| || | || | |||||||||||||| | |||  ||||||||||||||||||| ||||| |||||    
T  42006484 aatacgtttatgttatttccttcaac-gtaccatcgtgccacgttacgattccatcgtgccacgattttttcagtgacttgc 42006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 2802 - 2670
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  2802 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaa 2704  T
Q  108 acctcc-atcgtgccacgttgccttgccatcgtg 140  Q
    |||||| ||||||||||||||||| || ||||||    
T  2703 acctccaatcgtgccacgttgcctagcaatcgtg 2670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 22062 - 21915
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22062 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 21963  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  21962 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 24337 - 24190
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  24337 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 24238  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
      ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  24237 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 69665 - 69825
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 112  Q
    ||||||||| |||| || ||||||| | ||||||||||| ||||||||| ||||| |||| |||||||||||||||| ||||||| |||  |||||||||    
T  69665 aatatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgtgctacgatttttccagtgctttgcctc-aaacttgaaacctc 69763  T
Q  113 c-atcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaa 173  Q
    | ||||||||||||||||| ||||||||||||||||  |||| ||||||||||| |||||||    
T  69764 caatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaa 69825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 73427 - 73536
Alignment:
Q  64 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatcatgcataaatctga 162  Q
    |||||||||||| ||||||||||||| ||||||||||   ||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||||    
T  73427 ccatcgtgccacaatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcataaatctga 73525  T
Q  163 tttgaagttaa 173  Q
    ||| |||||||    
T  73526 ttttaagttaa 73536  T

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Target: scaffold0472 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 6074 - 5927
Alignment:
Q  34 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 133  Q
    |||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||  ||    
T  6074 gccagcgcaccatcgtgccatgatgagaccccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccgcgaagcccagc 5975  T
Q  134 catcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    | ||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  5974 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

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Target: scaffold0068 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 29078 - 29001
Alignment:
Q  13 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 90  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29078 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 29001  T

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Target: scaffold0068; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  117 gtgccacgttgccttgccatcgtgccacgatcatgcataaatctgatttgaagttaaatctcaca 181  Q
    |||||||||||||  ||||||||||||||||  |||| ||| ||||||| ||||||| |||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0131 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 14941 - 14768
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 107  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||| |||| || || |||||||||||||||  ||||||||| |||||||| | |||||||    
T  14941 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatcccatcgtgccacgaaatttccagtgacttgcctc-ataactgaa 14843  T
Q  108 acct-ccatcgtgccacgttgccttgccatcgtgccacga-tcatgcataaatctgatttgaagttaaatctcac 180  Q
    || | ||||||| |||||||||| | | |||||||||||| || |||| ||  ||||||| ||||||| ||||||    
T  14842 acttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

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Target: scaffold0339 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 3919 - 3872
Alignment:
Q  8 ccaataatatgtttatgttatttgctgccaccgcaccatcgtgccacg 55  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  3919 ccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacg 3872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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