View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661_high_12 (Length: 247)

Name: NF9661_high_12
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661_high_12
NF9661_high_12
[»] chr6 (16 HSPs)
chr6 (105-230)||(17095606-17095739)
chr6 (11-194)||(17066986-17067177)
chr6 (37-230)||(16870346-16870529)
chr6 (37-107)||(16558631-16558701)
chr6 (37-157)||(16655604-16655728)
chr6 (39-115)||(16984995-16985068)
chr6 (158-223)||(16985125-16985190)
chr6 (37-78)||(16784821-16784862)
chr6 (190-230)||(16794920-16794960)
chr6 (186-230)||(16841534-16841578)
chr6 (179-230)||(16975728-16975779)
chr6 (195-230)||(17067196-17067231)
chr6 (200-230)||(16655782-16655812)
chr6 (200-228)||(16558494-16558522)
chr6 (202-230)||(16778898-16778926)
chr6 (202-230)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (24-230)||(7055690-7055894)
chr3 (190-230)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (145-230)||(13375738-13375832)
[»] scaffold0133 (4 HSPs)
scaffold0133 (52-106)||(6069-6120)
scaffold0133 (190-230)||(10558-10598)
scaffold0133 (190-230)||(15855-15895)
scaffold0133 (202-230)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (202-230)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 17095606 - 17095739
Alignment:
Q  105 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaatt--------ttaccacgaaatgttggttttacatcagattccaattta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||| |||||||| |    
T  17095606 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaattca 17095705  T
Q  197 aattcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||| |||||||||||    
T  17095706 aattcaggaatgtgagctatctaatgccaatctt 17095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 17066986 - 17067177
Alignment:
Q  11 ggcggtgccagaattgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga- 109  Q
    |||||||| ||||| ||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |     
T  17066986 ggcggtgcaagaatcgcttcccccaattccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttat 17067085  T
Q  110 --tatagtaagacaaaagataaatg--aacaagtaaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatt 194  Q
      ||||||||||||||| | ||| |  || || | ||||||||| |||||||   ||||||| || |||||||||| ||||||||| |||||    
T  17067086 tctatagtaagacaaaaaagaaaggaaaaaaaattaagagattcgttaaattaaattaccacaaattgttggttttgcatcagattgcaatt 17067177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 16870529 - 16870346
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatat---agtaagacaaaagataaatga 133  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || |||||| ||||   ||||| |||||||| ||| ||    
T  16870529 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaagga 16870430  T
Q  134 acaagtaaagagattcattaaattttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    |    | ||       ||||||||  ||||| |||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16870429 a----tcaa-------attaaatt--accacaaaatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgccaatctt 16870346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 16558701 - 16558631
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataattt 107  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || ||||||    
T  16558701 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattt 16558631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 16655604 - 16655728
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga---tatagtaagacaaaagataaatga 133  Q
    ||||||||||||  |||||| || |||||||||||||||||||||||||||| |||||||| || | ||||||   |||||||| |||||||| ||| ||    
T  16655604 ttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatattatagtaacacaaaagacaaagga 16655703  T
Q  134 a-caagtaaagagattcattaaatt 157  Q
    | ||| ||||| ||||| |||||||    
T  16655704 atcaaataaagggattcgttaaatt 16655728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 16984995 - 16985068
Alignment:
Q  39 ccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagt 115  Q
    |||||||||| |||||||||| ||||| ||||||||||||||   |||||||||||||| |||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaatataa---gtctaaaatcacaccatataatttgatatagt 16985068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 16985125 - 16985190
Alignment:
Q  158 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgc 223  Q
    |||||| | |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||    
T  16985125 ttaccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgc 16985190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16784821 - 16784862
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatat 78  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  16784821 ttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 16794920 - 16794960
Alignment:
Q  190 caatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatctt 16794960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 16841534 - 16841578
Alignment:
Q  186 attccaatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||| |||  |||||||||||||||||||||||||||||    
T  16841534 attccaatttcaatctaggaatgtgagctatcttatgccaatctt 16841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 16975779 - 16975728
Alignment:
Q  179 acatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  16975779 acatcagattccaatttaaatttaggaacatgagctgtcttataccaatctt 16975728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 17067196 - 17067231
Alignment:
Q  195 taaattcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||| |||||||||||||    
T  17067196 taaattcaggaatgtgagctattttatgccaatctt 17067231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 16655782 - 16655812
Alignment:
Q  200 tcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||||||||||||    
T  16655782 tcaggaatgtgagctatcttatgccaatctt 16655812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 16558522 - 16558494
Alignment:
Q  200 tcaggaatgtgagctatcttatgccaatc 228  Q
    |||||||||||||||||||||||||||||    
T  16558522 tcaggaatgtgagctatcttatgccaatc 16558494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 16778898 - 16778926
Alignment:
Q  202 aggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||||||||||    
T  16778898 aggaatgtgagctatcttatgccaatctt 16778926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 16784994 - 16785022
Alignment:
Q  202 aggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatctt 16785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 7055894 - 7055690
Alignment:
Q  24 ttgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagtaagacaaa 123  Q
    ||||||||| ||||| ||||||||| |||||||||| |||| |||||||||||||||   ||||| || || |  ||||   | |||||||||||| |||    
T  7055894 ttgcttccctgtattgcatgctgatatgatattctctgcacccattgttcaatataa---gtctagaaccatagcatat---tggatatagtaagaaaaa 7055801  T
Q  124 agataaatgaacaag-taaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatctt 219  Q
    ||| ||| ||| ||  ||||| |||| ||||||||   ||||||| ||||| || |||| |||||||||||||| | ||| | |||||||||||||||||    
T  7055800 agagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttgcatcagattccaatatcaatgccggaatgtgagctatctt 7055701  T
Q  220 atgccaatctt 230  Q
    |||||||||||    
T  7055700 atgccaatctt 7055690  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 38941802 - 38941762
Alignment:
Q  190 caatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatctt 38941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 13375738 - 13375832
Alignment:
Q  145 gattcattaaatt---ttaccacgaaatgttggttttacatca------gattccaatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||   ||||||| ||||||||||||| |||||      |||||||||| || |||||| |||||||||||||||| ||||||||    
T  13375738 gattcattaaattaaattaccacaaaatgttggttttgcatcaaatttagattccaattcaacttcaggtatgtgagctatcttatcccaatctt 13375832  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6069 - 6120
Alignment:
Q  52 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatt 106  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| ||||||||    
T  6069 atattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 10558 - 10598
Alignment:
Q  190 caatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatctt 10598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 15855 - 15895
Alignment:
Q  190 caatttaaattcaggaatgtgagctatcttatgccaatctt 230  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  15855 caattgaaattgaggaatgtgagctatcttatgccaatctt 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 6222 - 6250
Alignment:
Q  202 aggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||||||||||    
T  6222 aggaatgtgagctatcttatgccaatctt 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 6881 - 6909
Alignment:
Q  202 aggaatgtgagctatcttatgccaatctt 230  Q
    |||||||||||||||||||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatctt 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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