View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_16 (Length: 311)
Name: NF9661_low_16
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 37601986 - 37601699
Alignment:
| Q |
19 |
agaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctcc |
118 |
Q |
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| T |
37601986 |
agaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctcc |
37601887 |
T |
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| Q |
119 |
ctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcacaatgcaaaattcatttatatggagtt-nn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37601886 |
ctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcacaatgcaaaattcatttatatggagttaaa |
37601787 |
T |
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| Q |
218 |
nnnnnnggaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaa |
305 |
Q |
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| T |
37601786 |
aaaaaaagaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttataagctttgcaacaccaaa |
37601699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 39410729 - 39410650
Alignment:
| Q |
61 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
140 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatct |
39410650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 27107715 - 27107793
Alignment:
| Q |
62 |
acctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
140 |
Q |
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| T |
27107715 |
acctctttgaacctaacaatattaggatgcttcaatgatctatggttcatgatttccctttggacattatcatcaatct |
27107793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 12309331 - 12309285
Alignment:
| Q |
77 |
acaatattgggatgcttcaatgacctatgatttataatctccctttg |
123 |
Q |
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| T |
12309331 |
acaatattgggatgcctcagtgatctatgatttataatttccctttg |
12309285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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