View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_18 (Length: 253)
Name: NF9661_low_18
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31141641 - 31141873
Alignment:
| Q |
1 |
tatcattattctcgcgtcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgcccatttgttatatatacgatc |
100 |
Q |
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| T |
31141641 |
tatcattattctcgcttcccgttgtaacatacttttatataaccttttgcatggggcatcaaggaagatggtgaaatgcccatttgttatctatacgatc |
31141740 |
T |
|
| Q |
101 |
aagagcatatcatacaagagtgataagagggaactttattagttgaagcatgaatatctttcctaacattttgaaatatgcctttgtttctgttccgcca |
200 |
Q |
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||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31141741 |
aagagcataccgtacaagagtgataagagagaactttattagttgaagcatgaatatctttcctaacattttgaaatatgtctttgtttctgttccgcca |
31141840 |
T |
|
| Q |
201 |
aatctctcagaatgttacaataaaaagtagtca |
233 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
31141841 |
aatctatcagaatgttacaataaaaagtagtca |
31141873 |
T |
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