View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661_low_19 (Length: 253)

Name: NF9661_low_19
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661_low_19
NF9661_low_19
[»] chr3 (4 HSPs)
chr3 (1-243)||(31141405-31141647)
chr3 (115-226)||(25889642-25889754)
chr3 (149-238)||(37133804-37133894)
chr3 (122-229)||(30046435-30046542)
[»] chr7 (5 HSPs)
chr7 (23-240)||(1716535-1716754)
chr7 (115-238)||(7961783-7961907)
chr7 (115-210)||(11269991-11270087)
chr7 (185-238)||(1103164-1103217)
chr7 (23-75)||(38969274-38969326)
[»] chr4 (8 HSPs)
chr4 (106-238)||(27272577-27272711)
chr4 (128-229)||(29235134-29235236)
chr4 (128-243)||(10395964-10396080)
chr4 (165-243)||(53469703-53469781)
chr4 (99-238)||(53472525-53472663)
chr4 (132-238)||(32015169-32015276)
chr4 (115-229)||(50887398-50887513)
chr4 (114-217)||(9010408-9010512)
[»] chr2 (5 HSPs)
chr2 (160-241)||(10128504-10128585)
chr2 (168-243)||(8761225-8761301)
chr2 (89-232)||(25550091-25550234)
chr2 (165-238)||(37965530-37965604)
chr2 (193-233)||(15140819-15140859)
[»] chr6 (12 HSPs)
chr6 (26-209)||(11681363-11681548)
chr6 (115-238)||(2921841-2921965)
chr6 (115-230)||(13556003-13556119)
chr6 (114-238)||(11678846-11678967)
chr6 (116-238)||(13557975-13558098)
chr6 (165-241)||(14721712-14721787)
chr6 (165-238)||(2923208-2923282)
chr6 (165-238)||(16910146-16910219)
chr6 (165-233)||(11677133-11677201)
chr6 (167-243)||(22880021-22880097)
chr6 (167-238)||(16403530-16403600)
chr6 (167-243)||(22898136-22898212)
[»] chr8 (2 HSPs)
chr8 (120-238)||(33897216-33897335)
chr8 (128-207)||(42001905-42001985)
[»] chr5 (4 HSPs)
chr5 (165-238)||(32795580-32795653)
chr5 (128-238)||(19670676-19670787)
chr5 (173-241)||(26896583-26896651)
chr5 (167-238)||(32796346-32796417)
[»] chr1 (7 HSPs)
chr1 (115-243)||(24284824-24284953)
chr1 (165-238)||(22827077-22827150)
chr1 (165-238)||(22840975-22841048)
chr1 (122-208)||(12458581-12458668)
chr1 (115-236)||(22826631-22826753)
chr1 (155-233)||(24272758-24272836)
chr1 (27-134)||(12466064-12466172)
[»] scaffold0007 (1 HSPs)
scaffold0007 (165-233)||(260215-260283)
[»] scaffold0065 (1 HSPs)
scaffold0065 (116-215)||(34724-34822)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31141647 - 31141405
Alignment:
Q  1 aatgataataatagtaggataaaataaaaacgacacaagatttagcgtagtatccatcagtgtgttgactaatccgcagacagagtcatgaaaagaattt 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||| | |||||||||| | || ||||||||||||||| |||| ||||||||||||||||||     
T  31141647 aatgataataatagtaggacaaaatcaaaacgacacaagatatggcgtagtatcgagcaatgtgttgactaatccacagatagagtcatgaaaagaattc 31141548  T
Q  101 caccataatcaattattacaaatattaaatagtagaggtaataccaactatagcaaacttacttactattggtgcaagaaatactaacacgcaagacttt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31141547 caccataatcaattattacaaatattgaatagtagaggtaataccaattatagcaaacttacttactattggtgtaagaaatactaacacgcaagacttt 31141448  T
Q  201 tatttatatggctaaatctttgcatatttcttcctattctctg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31141447 tatttatatggctaaatctttgcatatttcttcctattctctg 31141405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 25889754 - 25889642
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    |||||||| | |||||| |||||||| | | | |||||||||| |  ||| |||||||||||||||||||||||||  ||||||||||||||||||| |     
T  25889754 attacaaagactaaataatagaggtactgctagctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatttatatgacc 25889655  T
Q  214 aaatctttgcata 226  Q
    ||| |||||||||    
T  25889654 aaacctttgcata 25889642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 37133804 - 37133894
Alignment:
Q  149 tatagcaaactt-acttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    ||||||||| || ||| ||||||| || |||||||||||| || ||||||||||||| ||| ||||||||||| | |||||| ||| ||||    
T  37133804 tatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatattttttcatatt 37133894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 30046542 - 30046435
Alignment:
Q  122 atattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctt 220  Q
    ||||| ||||||||||||||  | | |||||||||| |  ||| ||||||| | |||||||||||||||| |||  |||||||||||||||  || ||||    
T  30046542 atattgaatagtagaggtaacgctagctatagcaaaaccgactaactattg-tacaagaaatactaacacacaaagcttttatttatatggtcaagtctt 30046444  T
Q  221 tgcatattt 229  Q
    |||||||||    
T  30046443 tgcatattt 30046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 1716535 - 1716754
Alignment:
Q  23 aataaaaacgacacaagatttagcgtagtatccatcagtgtgttgactaatccgcagacagagtcat-gaaaagaatttcaccataatcaattattacaa 121  Q
    |||||||| |||| |||||||| ||||||||||| || |||||||||||||   | |  ||||| || |||||||||| ||| |||||| ||||| | |     
T  1716535 aataaaaatgacataagatttaacgtagtatccaacaatgtgttgactaattttcgggtagagttattgaaaagaattccactataatcgattatcatat 1716634  T
Q  122 atattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctt 220  Q
    ||| | ||||||||||||||||||| |||||  ||| || ||| ||||||| ||||||||||| |||||| |||||| |||||||||||||  || ||||    
T  1716635 atactgaatagtagaggtaataccagctataaaaaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctt 1716734  T
Q  221 tgcatatttcttcctattct 240  Q
    | ||||||| ||| ||||||    
T  1716735 tacatattttttcatattct 1716754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 7961907 - 7961783
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    ||||||||| || ||||||||| ||||| | | |||||||||| |  ||| |||||||||||||||||||||||||| |||| |||||||||||||| |     
T  7961907 attacaaattttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgacc 7961808  T
Q  214 aaatctttgcatatttcttcctatt 238  Q
    ||| |||||||||||||||| ||||    
T  7961807 aaacctttgcatatttcttcatatt 7961783  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 11270087 - 11269991
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatg 210  Q
    |||||||||| | |||||||||||||| || |  ||||||||| |  ||| |||||||||||||  ||||||||||| |||| ||||||||||||||    
T  11270087 attacaaatactgaatagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatg 11269991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1103217 - 1103164
Alignment:
Q  185 taacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||| |||| |||||||||||||||| || ||||| ||||||||||| ||||    
T  1103217 taacacacaaggcttttatttatatggccaagtctttacatatttcttcatatt 1103164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 38969274 - 38969326
Alignment:
Q  23 aataaaaacgacacaagatttagcgtagtatccatcagtgtgttgactaatcc 75  Q
    |||||||||||||||||||||| ||| ||||||| |  |||| ||||||||||    
T  38969274 aataaaaacgacacaagatttaacgtggtatccagccatgtgctgactaatcc 38969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 27272711 - 27272577
Alignment:
Q  106 taatcaattattacaaatattaaatagtagaggtaataccaactatagcaaa--cttacttactattggtgcaagaaatactaacacgcaagacttttat 203  Q
    |||| ||| ||||||||| || ||||||||| ||||| | | ||||||||||  |  ||| |||||||||||||||||||||||||| ||||||||||||    
T  27272711 taattaataattacaaattttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttat 27272612  T
Q  204 ttatatggctaaatctttgcatatttcttcctatt 238  Q
    ||||||| | ||| |||||||||||||||| ||||    
T  27272611 ttatatgaccaaacctttgcatatttcttcatatt 27272577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 29235134 - 29235236
Alignment:
Q  128 aatagtagaggtaataccaactatagcaaacttacttactattggtgcaagaaat-actaacacgcaagacttttatttatatggctaaatctttgcata 226  Q
    ||||||||| ||||||||||||||||||||   ||  |||||||||||||||||| |||||||| |||| | |||||||||||||| || ||||||||||    
T  29235134 aatagtagatgtaataccaactatagcaaaaccacgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcata 29235233  T
Q  227 ttt 229  Q
    |||    
T  29235234 ttt 29235236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 10396080 - 10395964
Alignment:
Q  128 aatagtagaggtaataccaactatagca-aacttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcata 226  Q
    ||||||||| | || |||| |||||||| |||  ||| ||||||| |||||||||||||||||| |||| ||||||||||||||||  | ||||||||||    
T  10396080 aatagtagaaggaacaccatctatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcata 10395981  T
Q  227 tttcttcctattctctg 243  Q
    ||||||| | |||||||    
T  10395980 tttcttcatcttctctg 10395964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 53469703 - 53469781
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctg 243  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||| |||| ||||    
T  53469703 actattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattatctg 53469781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 53472525 - 53472663
Alignment:
Q  99 ttcaccataatcaattattacaaatattaaatagtagaggtaataccaactatagc-aaacttacttactattggtgcaagaaatactaacacgcaagac 197  Q
    ||||| |||||| || |||||| ||| | ||||||||||||||  | | ||||||| ||||  ||| || ||||||||| ||||||||||||| ||| ||    
T  53472525 ttcactataatcgataattacagatactgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-ac 53472623  T
Q  198 ttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    ||||||||||||||| || ||||||||||||||||| ||||    
T  53472624 ttttatttatatggc-aagtctttgcatatttcttcgtatt 53472663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 32015276 - 32015169
Alignment:
Q  132 gtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttc 230  Q
    ||||| |||||| || |||||||||| |  ||| |||||||||||||||||||||||||| ||| || ||||||||| | || || ||||||||||| ||    
T  32015276 gtagatgtaatatcagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatc 32015177  T
Q  231 ttcctatt 238  Q
    ||||||||    
T  32015176 ttcctatt 32015169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 50887398 - 50887513
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagc-aaacttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    |||||| ||| ||||||||||||||||||| | ||||||| ||||  ||| |||||| ||| ||| || || ||| | |||||| ||||||||||||||     
T  50887398 attacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatttatatggcc 50887497  T
Q  214 aaatctttgcatattt 229  Q
    ||  ||||||||||||    
T  50887498 aagcctttgcatattt 50887513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 9010408 - 9010512
Alignment:
Q  114 tattacaaatattaaatagtagaggtaataccaactatagcaaact-tacttactattggtgcaagaaa-tactaacacgcaagacttttatttatatgg 211  Q
    ||||||||||| | |||  |||||||||||||||||||| |||| |  ||| |||||||||||| |||| ||||||||| ||||   |||||||||| ||    
T  9010408 tattacaaatactgaattctagaggtaataccaactatatcaaaatccactaactattggtgcacgaaattactaacacacaaggtctttatttata-gg 9010506  T
Q  212 ctaaat 217  Q
    ||||||    
T  9010507 ctaaat 9010512  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 10128585 - 10128504
Alignment:
Q  160 tacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctc 241  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||| | || ||||| ||||||||||| |||||||    
T  10128585 tactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctc 10128504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 8761225 - 8761301
Alignment:
Q  168 attggtgcaagaaatactaacacgcaagacttttatttatatggctaaa-tctttgcatatttcttcctattctctg 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||| |||| ||||    
T  8761225 attggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctg 8761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 25550234 - 25550091
Alignment:
Q  89 tgaaaagaatttcaccataatcaattattacaaatattaaatagtagaggtaataccaactatagcaaactt-acttactattggtgcaagaaatactaa 187  Q
    |||||||||||  || |||||| || |||||| ||| | ||||||| ||||||  ||| |||||| ||| |  ||| |||||| || ||||||||||||     
T  25550234 tgaaaagaattctactataatcgataattacagatactgaatagtaaaggtaactccagctataggaaaatccactaactattagtccaagaaatacta- 25550136  T
Q  188 cacgcaagacttttatttatatggctaaatctttgcatatttctt 232  Q
    ||| ||||||||||||||||||||| |||||||| ||||||||||    
T  25550135 cacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 37965530 - 37965604
Alignment:
Q  165 actattggtgcaagaaatactaacacgc-aagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||||||||||||||||||||||| | |||||||||||||||||  | || ||||||||||||||||| ||||    
T  37965530 actattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatatt 37965604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 15140859 - 15140819
Alignment:
Q  193 aagacttttatttatatggctaaatctttgcatatttcttc 233  Q
    |||||||||||||||||| | |||||||| |||||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttc 15140819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 11681363 - 11681548
Alignment:
Q  26 aaaaacgacacaagatttagcgtagtatccatcagtgtgttgactaatccgcagacagagtca-tgaaaagaatttcaccataatcaattattacaaata 124  Q
    ||||||||||||||||||| ||| |||| ||||| |||| |||||||||| |   || || |  |||||| |||| ||| ||||||||| |||||| |||    
T  11681363 aaaaacgacacaagatttaacgtggtatgcatcaatgtgctgactaatccacgagcaaagccgctgaaaaaaattccactataatcaatgattacatata 11681462  T
Q  125 ttaaatagtagaggtaataccaactatagcaaacttacttactattggtgcaagaaat-actaacacgcaagacttttatttatat 209  Q
     | ||||||| ||||||||||  |||||| |||   ||| ||||||| |||||||||| |||||||| ||| ||||||||||||||    
T  11681463 ctgaatagtataggtaatacctgctatagtaaaaccactaactattgttgcaagaaattactaacacacaaaacttttatttatat 11681548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 2921841 - 2921965
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    ||||||||| || |||| |||| ||||| | | |||||||||| |  ||| ||||||||||||||||||||||||||  |||||||||||||||||  |     
T  2921841 attacaaattttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattacc 2921940  T
Q  214 aaatctttgcatatttcttcctatt 238  Q
    || || |||||||||||||| ||||    
T  2921941 aagtcattgcatatttcttcatatt 2921965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 13556003 - 13556119
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    ||||||||| || ||||||||| ||||| | | |||||||||| |  | | |||||||||||||||||||||||||| |||| |||||||||||||| |     
T  13556003 attacaaattttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgacc 13556102  T
Q  214 aaatctttgcatatttc 230  Q
    ||  |||||||||||||    
T  13556103 aagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 11678967 - 11678846
Alignment:
Q  114 tattacaaatattaaatagtagaggtaataccaactatagcaaacttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    ||||||||||| | ||||||||||||||| | |||||||||||| |     ||||||||||  |||||||||||||| ||||| ||||||||| ||| |     
T  11678967 tattacaaatactgaatagtagaggtaatgctaactatagcaaaatcc---actattggtgttagaaatactaacacacaagagttttatttacatgacc 11678871  T
Q  214 aaatctttgcatatttcttcctatt 238  Q
    ||  |||||||||||||||| ||||    
T  11678870 aagcctttgcatatttcttcatatt 11678846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 13557975 - 13558098
Alignment:
Q  116 ttacaaatattaaatagtagaggtaataccaactatagcaaactt-acttactattggtgcaagaaatactaacacgcaagacttttatttatatggcta 214  Q
    |||||||| || ||||||||| ||||| | | | |||||||| |  ||| |||||||||||| ||||||||||||| |||  |||||||||||||| | |    
T  13557975 ttacaaattttgaatagtagaagtaatgctagcaatagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgacca 13558074  T
Q  215 aatctttgcatatttcttcctatt 238  Q
    |  |||||||||||||||| ||||    
T  13558075 agcctttgcatatttcttcatatt 13558098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 14721787 - 14721712
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctc 241  Q
    ||||||| ||||||||||||| | |  |||| |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  14721787 actattgctgcaagaaatacttataaacaaggcttttatttata-ggccaaatctttgcatatttctttctattctc 14721712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 2923208 - 2923282
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatc-tttgcatatttcttcctatt 238  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||||| | ||  | ||||||||||||||| ||||    
T  2923208 actattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatatttcttcatatt 2923282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 16910146 - 16910219
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||  || || |||||||||||| |||| ||||    
T  16910146 actattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatatt 16910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 11677201 - 11677133
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttc 233  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||   ||  ||||||||||||||||    
T  11677201 actattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttc 11677133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 22880021 - 22880097
Alignment:
Q  167 tattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctg 243  Q
    ||||||||||||||||| |||||| ||| || |||||||||||| | || | |||  ||||||||| ||||||||||    
T  22880021 tattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctg 22880097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 16403600 - 16403530
Alignment:
Q  167 tattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||||||||  ||||  ||||| ||||||||||||||||||| |||| || |||||||||||||| ||||    
T  16403600 tattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatt 16403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 22898136 - 22898212
Alignment:
Q  167 tattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctg 243  Q
    ||||||||||||||||| ||||||  || || |||||||||||| | || | |||  ||||||||| ||||||||||    
T  22898136 tattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctttctattctctg 22898212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 33897335 - 33897216
Alignment:
Q  120 aaatattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatc 218  Q
    ||||||| |||||| ||| |||||  ||||||| |||| | |||| | |||||||| || |||||||||||| |||||||||||||||||| |  |||||    
T  33897335 aaatattgaatagtggagataatataaactataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatc 33897236  T
Q  219 tttgcatatttcttcctatt 238  Q
    ||| ||||||||||||||||    
T  33897235 tttacatatttcttcctatt 33897216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 42001985 - 42001905
Alignment:
Q  128 aatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttat 207  Q
    ||||||||| ||||| | | |||||||||| | |||| |||||||||||||| | ||||||||| ||||||||||||||||    
T  42001985 aatagtagaagtaatgctacctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 32795580 - 32795653
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||    
T  32795580 actattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttcttcatatt 32795653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 19670787 - 19670676
Alignment:
Q  128 aatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcata 226  Q
    ||||||||||||||  | | |||||||||| |  ||| ||||||||| |||| ||||||||||| |||| |||||||||||||| ||||  |||||||||    
T  19670787 aatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcata 19670688  T
Q  227 tttcttcctatt 238  Q
    ||||||| ||||    
T  19670687 tttcttcatatt 19670676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 26896651 - 26896583
Alignment:
Q  173 tgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctc 241  Q
    |||||||||||||||||| |||    |||||||||||||| || |||||||||||||||||||||||||    
T  26896651 tgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctc 26896583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 32796346 - 32796417
Alignment:
Q  167 tattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||| ||||||| ||||||||||| |||| |||||||||||||| ||||  |||||||||||||||| ||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatatt 32796417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 24284953 - 24284824
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaactt-acttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    |||||| ||| |||||||||||| |||||||| |||||| ||  |  ||| ||||||||||||||||||| |||||| |||  | ||||||||||| ||     
T  24284953 attacagatactaaatagtagagctaataccagctatagtaacatccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagcc 24284854  T
Q  214 aaatctttgcatatttcttcctattctctg 243  Q
    |||| ||||||||||| ||| |||||||||    
T  24284853 aaatatttgcatatttgttcatattctctg 24284824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 22827077 - 22827150
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||||||||||||||||  ||||| |||| |||||||||||||| | ||| |||||||||||||||| ||||    
T  22827077 actattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatttcttcatatt 22827150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 22841048 - 22840975
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 238  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||| | ||  |||||||||||||||| ||||    
T  22841048 actattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatttcttcatatt 22840975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 12458668 - 12458581
Alignment:
Q  122 atattaaatagtagaggtaataccaactatagcaaa-cttacttactattggtgcaagaaatactaacacgcaagacttttatttata 208  Q
    ||||| ||||||||||||||||||| || ||||||| | |||| ||||||||| |||||||||||||||| ||||   ||||||||||    
T  12458668 atattgaatagtagaggtaataccagctctagcaaatcctactaactattggtacaagaaatactaacacacaaggtctttatttata 12458581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 22826631 - 22826753
Alignment:
Q  115 attacaaatattaaatagtagaggtaataccaactatagcaaactt-acttactattggtgcaagaaatactaacacgcaagacttttatttatatggct 213  Q
    |||| |||| || ||||||||| ||||| | | |||||||||| |  ||| ||||||||||||||||||||||||||  ||| |||||||||||||| |     
T  22826631 attaaaaattttgaatagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgacc 22826730  T
Q  214 aaatctttgcatatttcttccta 236  Q
    ||  ||||||| |||| ||||||    
T  22826731 aagcctttgcagattttttccta 22826753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 24272836 - 24272758
Alignment:
Q  155 aaacttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttc 233  Q
    ||||| ||| |||||||||||||||||||||||||| |||| | ||||| ||||| |  || |||||||||||||||||    
T  24272836 aaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttc 24272758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 12466172 - 12466064
Alignment:
Q  27 aaaacgacacaagatttagcgtagtatccatcagtgtgttgactaatccgcagacagagtcat-gaaaagaatttcaccataatcaattattacaaatat 125  Q
    |||||| ||||||||| | ||| |||||||||| |||| |||||||| | | | ||||| ||| |||||||||| ||| ||||| ||| |||| ||||||    
T  12466172 aaaacggcacaagattaaacgtggtatccatcaatgtgctgactaattcacgggcagagccattgaaaagaattccactataattaatgattataaatat 12466073  T
Q  126 taaatagta 134  Q
    | |||||||    
T  12466072 tgaatagta 12466064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 260215 - 260283
Alignment:
Q  165 actattggtgcaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttc 233  Q
    |||||||||||||||||||||||||| ||||  |||||||||| || |||| |||||||||||||||||    
T  260215 actattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttc 260283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 34822 - 34724
Alignment:
Q  116 ttacaaatattaaatagtagaggtaataccaactatagc-aaacttacttactattggtgcaagaaatactaacacgcaagacttttatttatatggcta 214  Q
    ||||||||| ||||||||||| ||||||  | ||||||| ||||  ||| ||||||||||| |  ||||||||||  ||||||||||||||||||| |||    
T  34822 ttacaaatactaaatagtagaagtaatattagctatagcaaaacccactaactattggtgctaataatactaaca--caagacttttatttatatgacta 34725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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