View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661_low_22 (Length: 252)

Name: NF9661_low_22
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661_low_22
NF9661_low_22
[»] chr6 (4 HSPs)
chr6 (103-211)||(30739432-30739542)
chr6 (48-102)||(29292350-29292404)
chr6 (69-103)||(4455916-4455950)
chr6 (65-103)||(21528907-21528945)
[»] scaffold0131 (1 HSPs)
scaffold0131 (48-102)||(7922-7976)
[»] chr7 (3 HSPs)
chr7 (48-102)||(25069298-25069352)
chr7 (67-102)||(20623149-20623184)
chr7 (49-105)||(39238092-39238148)
[»] chr1 (3 HSPs)
chr1 (48-102)||(46545380-46545434)
chr1 (53-103)||(11191464-11191514)
chr1 (67-103)||(35284167-35284203)
[»] chr4 (6 HSPs)
chr4 (67-102)||(41866656-41866691)
chr4 (52-101)||(293603-293652)
chr4 (67-102)||(18707549-18707584)
chr4 (67-108)||(34856001-34856042)
chr4 (67-111)||(25510478-25510522)
chr4 (67-103)||(32988307-32988343)
[»] scaffold0636 (1 HSPs)
scaffold0636 (67-108)||(1535-1576)
[»] chr8 (3 HSPs)
chr8 (52-104)||(10717053-10717105)
chr8 (48-102)||(31893255-31893309)
chr8 (52-102)||(45219581-45219631)
[»] chr5 (4 HSPs)
chr5 (67-102)||(33225010-33225045)
chr5 (67-102)||(43581750-43581785)
chr5 (52-102)||(23015033-23015083)
chr5 (67-103)||(28014927-28014963)
[»] chr2 (3 HSPs)
chr2 (67-102)||(37032878-37032913)
chr2 (67-102)||(40404311-40404346)
chr2 (65-102)||(7501379-7501416)
[»] chr3 (2 HSPs)
chr3 (65-103)||(51229576-51229614)
chr3 (65-102)||(41459732-41459769)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 30739542 - 30739432
Alignment:
Q  103 gatgtatgtcccatagacattcattagcttgtcccgtnnnnnnn--tgctttcataatcggttaaagacatttgtgtggccttaccaaattacttgccac 200  Q
    |||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30739542 gatgtatgtcccatagacattcattagcttgtcctgtaaaaaaaaatgctttcataatcggttaaagacatttgtgtggccttaccaaattacttgccac 30739443  T
Q  201 cacatcaatta 211  Q
    |||||||||||    
T  30739442 cacatcaatta 30739432  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 29292350 - 29292404
Alignment:
Q  48 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  29292350 tcattgacctagtgatatgaccgaatcgatgaccggtccgatttttaaaactatg 29292404  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 4455916 - 4455950
Alignment:
Q  69 cgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    ||||||||||||||||| |||||||||||||||||    
T  4455916 cgagtcgatgaccggtctgatttttaaaactatgg 4455950  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 21528907 - 21528945
Alignment:
Q  65 tgaccgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  21528907 tgaccgagtcgatcaccggtccgagttttaaaactatgg 21528945  T

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Target: scaffold0131 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 7922 - 7976
Alignment:
Q  48 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7922 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 7976  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 25069352 - 25069298
Alignment:
Q  48 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25069352 tcattgacctagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 25069298  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 20623184 - 20623149
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20623184 accgagtcgatgaccggtccggtttttaaaactatg 20623149  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 39238092 - 39238148
Alignment:
Q  49 cattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatggat 105  Q
    ||||||||||| ||  | |||||||| |||||||||||  |||||||||||||||||    
T  39238092 cattgacccagggaccttaccgagtcaatgaccggtccagtttttaaaactatggat 39238148  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 46545434 - 46545380
Alignment:
Q  48 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  46545434 tcattgacccagtgatatgaccgactcgattaccggtccgatttttaaaactatg 46545380  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 11191464 - 11191514
Alignment:
Q  53 gacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  11191464 gacccagtgatatgaccgagtcgataaccggtctgatttttaaaactatgg 11191514  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 35284203 - 35284167
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35284203 accgagtcgatgaccgatccgatttttaaaactatgg 35284167  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 41866691 - 41866656
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||||||||||||||||||||||||||    
T  41866691 accgagtcgatgaccggtccgatttttaaaactatg 41866656  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 293603 - 293652
Alignment:
Q  52 tgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactat 101  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  293603 tgacccagtgacctcaccgagtcaatgaccggtccgatttttaaaactat 293652  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 18707549 - 18707584
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18707549 accgagtcgatcaccggtccgatttttaaaactatg 18707584  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 34856042 - 34856001
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatggatgta 108  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  34856042 accgagtcgatgactggtccggtttttaaaactatgtatgta 34856001  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 25510522 - 25510478
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatggatgtatgt 111  Q
    |||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  25510522 accgagtcgacgaccggtccgagttttaaaactatgcatggatgt 25510478  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 32988307 - 32988343
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  32988307 accgagtcgatggccggtccgagttttaaaactatgg 32988343  T

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Target: scaffold0636 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 1576 - 1535
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatggatgta 108  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  1576 accgagtcgatgaccggtccgagttttaaaactatggttgta 1535  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 10717053 - 10717105
Alignment:
Q  52 tgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatgga 104  Q
    |||||||||  | |||||||||||||| |||||||| ||||||||||||||||    
T  10717053 tgacccagtactttgaccgagtcgatgtccggtccggtttttaaaactatgga 10717105  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 31893255 - 31893309
Alignment:
Q  48 tcattgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||| |  | |||||||||| |||| ||||||||||||||||||||    
T  31893255 tcattgacccagtaaccttaccgagtcgacgaccagtccgatttttaaaactatg 31893309  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 45219581 - 45219631
Alignment:
Q  52 tgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||||  | |||||||| |||||||||||| ||||||||||||||    
T  45219581 tgacccagtgacctcaccgagtcaatgaccggtccggtttttaaaactatg 45219631  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 33225010 - 33225045
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33225010 accgagtcgatgaccggtccggtttttaaaactatg 33225045  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 43581750 - 43581785
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||||||||||| ||||||||||||||    
T  43581750 accgagtcgatgaccggtccggtttttaaaactatg 43581785  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 23015083 - 23015033
Alignment:
Q  52 tgacccagtgatatgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||  | |||||||||||||| ||| |||||||||||||||||||    
T  23015083 tgacccagtactttgaccgagtcgatgtccgatccgatttttaaaactatg 23015033  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 28014963 - 28014927
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    |||||||| |||||||||||| |||||||||||||||    
T  28014963 accgagtcaatgaccggtccggtttttaaaactatgg 28014927  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 37032878 - 37032913
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37032878 accgagtcgatgaccggtccggtttttaaaactatg 37032913  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 40404346 - 40404311
Alignment:
Q  67 accgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||||||||| |||||||||||||||||||    
T  40404346 accgagtcgatgaccgatccgatttttaaaactatg 40404311  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 7501416 - 7501379
Alignment:
Q  65 tgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  7501416 tgaccgagtcgatcaccggtccgagttttaaaactatg 7501379  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 51229576 - 51229614
Alignment:
Q  65 tgaccgagtcgatgaccggtccgatttttaaaactatgg 103  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  51229576 tgaccgagtcgatcaccggtccgagttttaaaactatgg 51229614  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 41459732 - 41459769
Alignment:
Q  65 tgaccgagtcgatgaccggtccgatttttaaaactatg 102  Q
    |||||||||||||  |||||||||||||||||||||||    
T  41459732 tgaccgagtcgatatccggtccgatttttaaaactatg 41459769  T

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