View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_23 (Length: 251)
Name: NF9661_low_23
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_23 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 2018 - 2136
Alignment:
| Q |
44 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattgtttcttaaaaggtttttggtacgaata |
143 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
2018 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctactataggtgttttggttggttttaattgtttttttaaaggtttttggtacaaata |
2117 |
T |
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| Q |
144 |
gcatatgataggtgtttag |
162 |
Q |
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||||||||||||||||||| |
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| T |
2118 |
gcatatgataggtgtttag |
2136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 2252 - 2332
Alignment:
| Q |
158 |
tttagtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactatatatgttctttttgtttttcaggtct |
238 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2252 |
tttagtggtgtcgtgatgtaggagatgtaagggttttctgtgcgtattttactatatatgttctttttgttttccaggtct |
2332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 14279519 - 14279400
Alignment:
| Q |
44 |
ggtgtttatttggtctcatttgtgagaagagaacattaggtgctactataggtgttttggttggttttaattg-tttcttaaaaggtttttggtacgaat |
142 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||| |
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| T |
14279519 |
ggtgtttatttggtctcatttgtgcgaagagaacattaggtgctagtataggtgttttggtcggttttaattgttttttttaaaggtttttgatacgaat |
14279420 |
T |
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| Q |
143 |
agcatatgataggtgtttag |
162 |
Q |
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| T |
14279419 |
agcatatgatagctgtttag |
14279400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 14279281 - 14279230
Alignment:
| Q |
161 |
agtggtgtggtgatgtaggagatgtaagggttttctgtgcttattttactat |
212 |
Q |
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| T |
14279281 |
agtggtgtgttgatgtatgagatgtaagggttttctgtgcgtattttactat |
14279230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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