View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_32 (Length: 233)
Name: NF9661_low_32
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30901966 - 30901746
Alignment:
| Q |
1 |
aattatttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
30901966 |
aattatttgtaaccatgtcaatataagcaatttttaatcaccttccacacagagatgtgaaactccatcacgccaggctagctccaaacccagatataaa |
30901867 |
T |
|
| Q |
101 |
ccccaatttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcattactatcccaaagaagaccgccgcccgc |
200 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| || | |
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| T |
30901866 |
ccccaatttaatttgtatgcagagcatcacaatctccaatcttgcacacaaattctttgagtcatttgccattactatcccgaagaagaccgccgtccac |
30901767 |
T |
|
| Q |
201 |
cgctttcccgcatgatgtccat |
222 |
Q |
| |
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||| |||||||||||| ||||| |
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| T |
30901766 |
cgc-ttcccgcatgatttccat |
30901746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37752611 - 37752426
Alignment:
| Q |
1 |
aattatttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||| || | |||||||||||||| |||||||||| | |||||||| ||||| | ||| ||| |
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| T |
37752611 |
aattatttgtaaccatgtcaataaa--caattttgaatcactctccatacagagatgtgaaattccatcacgccaagctagctctaaaccaaaatacaaa |
37752514 |
T |
|
| Q |
101 |
ccccaatttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcattactatcccaaagaagac |
190 |
Q |
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||||| || | |||||| |||||||||||| | | |||||||||||||||| ||||| ||| | ||||| ||||||||||||||| |
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| T |
37752513 |
ccccacatt--tctgcatgtagagcatcacaaacaccaatcttgcgcacaaatcttttgaaccatctaccattagtatcccaaagaagac |
37752426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5321658 - 5321492
Alignment:
| Q |
1 |
aattatttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaa |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| | |||| ||| ||| |||||||||||| |||||||| | |||||||||||||| | ||| ||| |
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| T |
5321658 |
aattatttgtaaccatatcaata--agcaattttgagtcactttccacatagagatgtgaaattccatcacttcaagctagctccaaaccta-atacaaa |
5321562 |
T |
|
| Q |
101 |
ccccaatttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcat |
172 |
Q |
| |
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|| ||| || | |||||| |||||||||||| ||| ||||||||| |||||| ||||||| ||| |||||| |
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|
| T |
5321561 |
cctcaaatt--tctgcatgaagagcatcacaaactccaatcttgcgtacaaatcctttgagccatctgtcat |
5321492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 41550180 - 41550364
Alignment:
| Q |
6 |
tttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaacccca |
105 |
Q |
| |
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|||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| ||| | ||||||||||| || | |||||||||||| |
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| T |
41550180 |
tttgtaaccatgtcaata--agcaattttgaatcgccttccacacagagatgtgaaactccatcccgccaagctagctccaaccctaaatataaacccca |
41550277 |
T |
|
| Q |
106 |
atttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcattactatcccaaagaagaccgcc |
194 |
Q |
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|| | ||||||||||||||| ||| ||| ||| |||||||||||| ||||||| || ||||||||| | |||| |||||||||||| |
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| T |
41550278 |
catt--tctgcatgcagagcatcgcaaactccaattttgcgcacaaatcctttgagccacttgtcattagtgtcccgaagaagaccgcc |
41550364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 36732838 - 36732650
Alignment:
| Q |
1 |
aattatttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaa |
100 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| |||||| ||| | || | |||||||||||||||||| | |||||||||||||||| ||| | | |
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| T |
36732838 |
aattatttgtaaccatgttaataaa--caattttgaatcactttctagacgaatatgtgaaactccatcacgtcatgctagctccaaacccaaatacaca |
36732741 |
T |
|
| Q |
101 |
ccccaatttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcattactatcccaaagaagaccgc |
193 |
Q |
| |
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||||| || | ||||||||||||||||||| || ||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||||| |
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| T |
36732740 |
ccccacatt--tctgcatgcagagcatcacaaacttcaatcttgcgcacaaattatttgagccatttatcattagtatcctgaagaagaccgc |
36732650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 6262089 - 6262024
Alignment:
| Q |
114 |
tgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcattactatc |
179 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||||||| |||| |
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|
| T |
6262089 |
tgcatgcagagcatcacgaactccaatcttgcgcacaaatcccttgagtcatttgtcattagtatc |
6262024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 29515200 - 29515364
Alignment:
| Q |
3 |
ttatttgtaaccatgtcaatataagcaattttcaatcaccttcaacacagagatgtgaaactccatcacgctaggctagctccaaacccatatataaacc |
102 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||| || | ||||||||||| | | || |||| |
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| T |
29515200 |
ttatttctaactatgtcaata--agcaattttgaatcgccttccacacatagatgtgaaactccattccgtcaagctagctccaacctcgaat---aacc |
29515294 |
T |
|
| Q |
103 |
ccaatttaatttgcatgcagagcatcacaatctctaatcttgcgcacaaattctttgagtcatttgtcatta |
174 |
Q |
| |
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||| || | ||||||||||||||| ||| ||| |||||||| ||||||| ||||||| ||||| ||||| |
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| T |
29515295 |
ccacatt--tctgcatgcagagcatcgcaaactccaatcttgcacacaaatcctttgagcaatttgccatta |
29515364 |
T |
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