View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_34 (Length: 229)
Name: NF9661_low_34
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30887915 - 30887801
Alignment:
| Q |
1 |
ttaaataatagatcattttgtttctaatatttagaaaaatgttgtttaactgaatttgtggttttgtatgtacatgtatagagtattgtaagattataga |
100 |
Q |
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| T |
30887915 |
ttaaataatagaccattttgtttctaatatttagaaaaatgttgtttaactgaatttgtggttttgtatgtacatgtatagagtattgtaagattataga |
30887816 |
T |
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| Q |
101 |
cttaatagtaacgac |
115 |
Q |
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| T |
30887815 |
cttaattgtaacgac |
30887801 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 30887762 - 30887706
Alignment:
| Q |
167 |
gacatttctcacaatcacaaaatatgatcagtttcacaaataaaggaaaatttgatt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30887762 |
gacatttctcacaatcacaaaatatgatcagtttcacaaataaaggaaaatttgatt |
30887706 |
T |
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