View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_35 (Length: 225)
Name: NF9661_low_35
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 40146420 - 40146607
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40146420 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
40146519 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40146520 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacat |
40146607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 40409413 - 40409598
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
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||||||||||| || ||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40409413 |
atgggatctccagttcctactagttgcacgcaccaaaaag--tcttcttcatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
40409510 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacat |
207 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||| | |||||| || || ||||||||| |||| |||| ||||||| |
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| T |
40409511 |
tcctctgcccttgcctttttcccaccacttgcaggccgtctagagagaacagaccataaagacaacaccatttcgtgttgtgtcacat |
40409598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 8103537 - 8103379
Alignment:
| Q |
47 |
acccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccacca |
146 |
Q |
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||||||| | |||||||| ||||| ||||||||||||| | |||||||||||| ||| || ||||| |||||||| ||||| ||||| |||||||||| | |
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| T |
8103537 |
acccacccataagggtctcctttaccaccatcctctagagtcaaaccaaattccacagctaaaacaatctctatcatctactcttgcttttttcccacta |
8103438 |
T |
|
| Q |
147 |
cttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcac |
205 |
Q |
| |
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|||||||||||||||||||||||||| || | ||||||||| | || ||||| ||||| |
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| T |
8103437 |
cttgcaggccgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcac |
8103379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 8935132 - 8935281
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
| |
|
|||||||||||||| ||||| ||| || ||| ||||||||| ||| ||||||||||||| | || | |||||||| |||| |||| |||||||||| |
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| T |
8935132 |
atgggatctccggtcactacttattccaaccaacaaaaagggccttttttatcaccatccggttgtatctaaccaaatccaacggctgagacactctcta |
8935231 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataac |
169 |
Q |
| |
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||||| |||||||||||||||| ||| ||||| |||||||| ||||||| |
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| T |
8935232 |
tcttcaacccttgcctttttccaacctcttgccggccgtctcaaaataac |
8935281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 8934207 - 8934321
Alignment:
| Q |
36 |
ctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcct |
135 |
Q |
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||||| ||| || ||| ||||||||| ||||||||| ||||||| | || | |||||||| ||||| || | ||||||||||||||| |||||||||| |
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| T |
8934207 |
ctacttattccaaccaacaaaaagggccttctttattaccatccggttgtatctaaccaaatccaacagctaagacactctctatcttcaacccttgcct |
8934306 |
T |
|
| Q |
136 |
ttttcccaccacttg |
150 |
Q |
| |
|
|||||| ||| |||| |
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| T |
8934307 |
ttttccaacctcttg |
8934321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 7638155 - 7637973
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
| |
|
||||||||||||||| ||||| || | ||| ||||||||| |||||||||| |||||| | || | |||||||| |||| |||| ||||||||| |
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| T |
7638155 |
atgggatctccggtatctacttgttttaaccaacaaaaagggccttctttatcgccatccggttgtagctaaccaaatccaacggctgagacactctctg |
7638056 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgt |
202 |
Q |
| |
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|| || ||||||||||||||| ||| ||||| |||||||| ||||||| || |||| |||||||| ||||| |||||||| |
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| T |
7638055 |
tcctcagcccttgcctttttccaacctcttgccggccgtctcaaaataacggaacacagagacaacactgtttcgtgttccgt |
7637973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 7629709 - 7629545
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
| |
|
|||||||||||| | ||||| || || ||| ||||||||| |||||||||| |||||| | || ||| |||||| |||| |||| |||||||||| |
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| T |
7629709 |
atgggatctccgctttctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctcta |
7629610 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaa |
184 |
Q |
| |
|
|| ||| ||||| ||||||| | ||| ||||| |||||||| |||||||| || ||||||||||| |
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|
| T |
7629609 |
tcctctgccctttccttttttcaacctcttgctggccgtcttgaaataacggaacacaaggacaa |
7629545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 7616284 - 7616141
Alignment:
| Q |
56 |
aaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggc |
155 |
Q |
| |
|
|||||||||||||||||||||||| | | | |||||||| |||| |||| ||||||| | || ||| ||||||||||||||| ||| ||| | ||| |
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| T |
7616284 |
aaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggc |
7616185 |
T |
|
| Q |
156 |
cgtctagaaataacagatcacaaggacaacaccgtttcatgttc |
199 |
Q |
| |
|
||||| ||||||| || ||||| ||||||||||| || ||||| |
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|
| T |
7616184 |
cgtctcaaaataacggagcacaatgacaacaccgtctcgtgttc |
7616141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 7607324 - 7607142
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
| |
|
|||||||||||| | ||||| || || ||| ||||||||| ||||||||||| ||||| | || ||| |||||| |||| ||| |||||||||| |
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| T |
7607324 |
atgggatctccgttttctacttgtttcaaccaacaaaaagggccttctttatcatcatccggtggttgcaacccaaatccaacggttgagacactctcta |
7607225 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgt |
202 |
Q |
| |
|
|| ||| ||||| ||||||||| ||| ||||| ||||| || |||||||| || || | ||||||| || ||||||||||| |
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|
| T |
7607224 |
tcctctgccctttcctttttccaacctcttgccggccgccttgaaataacggaacatagagacaacattgtctcatgttccgt |
7607142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 7655205 - 7655311
Alignment:
| Q |
54 |
aaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcag |
153 |
Q |
| |
|
||||| || |||||||||||||||||| ||| || |||||||||||| |||| ||||||| |||| || ||||| ||||||||| ||| ||||| | |
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| T |
7655205 |
aaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacggctgacacactctttatcctcagccctttcctttttccaacctcttgccg |
7655304 |
T |
|
| Q |
154 |
gccgtct |
160 |
Q |
| |
|
| ||||| |
|
|
| T |
7655305 |
gtcgtct |
7655311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 6501595 - 6501408
Alignment:
| Q |
20 |
atgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctcta |
119 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||| | ||| ||||| || |||| |||||||| ||| || | ||||||| || |
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|
| T |
6501595 |
atgggatctccagttcctactaattgcacccaccaaaataggtcttttctatgaccattctttagtagtcaaccaaatagaacgccttagacactcttta |
6501496 |
T |
|
| Q |
120 |
tcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacat |
207 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||| |||||||| |||| || || || | ||||||| |||||||||||| |||||| |
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| T |
6501495 |
tcctctgtccttgcctttttccaaccacttgcgggccgtctcaaaatgacggaaaacgaagacaacaatgtttcatgttccatcacat |
6501408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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