View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661_low_4 (Length: 454)

Name: NF9661_low_4
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661_low_4
NF9661_low_4
[»] chr8 (4 HSPs)
chr8 (1-445)||(12200124-12200573)
chr8 (1-445)||(12444552-12445001)
chr8 (34-445)||(12195150-12195555)
chr8 (34-445)||(12439578-12439983)
[»] chr4 (23 HSPs)
chr4 (173-234)||(50669044-50669105)
chr4 (184-234)||(7908325-7908375)
chr4 (182-235)||(7237753-7237806)
chr4 (36-226)||(50250820-50251010)
chr4 (182-234)||(7877727-7877779)
chr4 (182-225)||(7771396-7771439)
chr4 (182-225)||(7790081-7790124)
chr4 (176-235)||(7813469-7813528)
chr4 (176-235)||(7822958-7823017)
chr4 (177-226)||(37827024-37827073)
chr4 (182-234)||(7773848-7773900)
chr4 (176-234)||(7765607-7765665)
chr4 (176-234)||(7786429-7786487)
chr4 (176-234)||(48852658-48852716)
chr4 (176-233)||(49048605-49048662)
chr4 (179-235)||(7800629-7800685)
chr4 (36-74)||(45372251-45372289)
chr4 (176-226)||(48170601-48170651)
chr4 (181-226)||(48147756-48147801)
chr4 (181-234)||(48898701-48898754)
chr4 (36-108)||(7877581-7877653)
chr4 (175-227)||(49044225-49044277)
chr4 (258-330)||(49048508-49048580)
[»] chr7 (1 HSPs)
chr7 (173-226)||(48883790-48883843)
[»] chr6 (2 HSPs)
chr6 (176-225)||(21979678-21979727)
chr6 (176-224)||(21015801-21015849)
[»] chr3 (2 HSPs)
chr3 (177-224)||(11005994-11006041)
chr3 (177-224)||(11024569-11024616)
[»] chr1 (2 HSPs)
chr1 (181-228)||(24310168-24310215)
chr1 (181-226)||(24367144-24367189)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 12200124 - 12200573
Alignment:
Q  1 cataattttctgcttcacagaggttacgatttctatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatgga 100  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200124 cataattttctgcttcacagaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatgga 12200223  T
Q  101 atccatcctctaggtttcacnnnnnnntacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccg 200  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  12200224 atccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccg 12200323  T
Q  201 gtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12200324 gtcaagagatgattacttggtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtgg 12200423  T
Q  301 aatgaaattgaaggtcctcacatcacttattttaataccagggatagtcccaaaccttccaaagcaggattattctttaatggg--gttactcattggtt 398  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  12200424 aatgaaattgaaggtcctcacatcacttcttttaataccagggatcatcccaaaccttccaaagcaggattattctttaatggggtgttattcattggtt 12200523  T
Q  399 aacttctcgtt---atcatggtttaccattggaagttattgttgcctttg 445  Q
    |||||||| ||   ||||||||||||||||||||||||||||||||||||    
T  12200524 aacttctcattatcatcatggtttaccattggaagttattgttgcctttg 12200573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 12444552 - 12445001
Alignment:
Q  1 cataattttctgcttcacagaggttacgatttctatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatgga 100  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444552 cataattttctgcttcacagaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatgga 12444651  T
Q  101 atccatcctctaggtttcacnnnnnnntacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccg 200  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  12444652 atccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccg 12444751  T
Q  201 gtcaagagatgattacttggtggttttattgtccctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12444752 gtcaagagatgattacttggtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtgg 12444851  T
Q  301 aatgaaattgaaggtcctcacatcacttattttaataccagggatagtcccaaaccttccaaagcaggattattctttaatggg--gttactcattggtt 398  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  12444852 aatgaaattgaaggtcctcacatcacttcttttaataccagggatcatcccaaaccttccaaagcaggattattctttaatggggtgttattcattggtt 12444951  T
Q  399 aacttctcgtt---atcatggtttaccattggaagttattgttgcctttg 445  Q
    |||||||| ||   ||||||||||||||||||||||||||||||||||||    
T  12444952 aacttctcattatcatcatggtttaccattggaagttattgttgcctttg 12445001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 34 - 445
Target Start/End: Original strand, 12195150 - 12195555
Alignment:
Q  34 tatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacnnnnnnntacctt 133  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||  ||||||||||||||||||||||||| ||||||       ||   |    
T  12195150 tatgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaataaaat 12195249  T
Q  134 tgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtc 233  Q
    |||||||||||| ||  || || | | |||   ||| || ||||||    ||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  12195250 tgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgacggattaagagatgattacttggtcgttttattgtc 12195349  T
Q  234 cctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttatttt 333  Q
    |  |  |||| ||||  |||||||||||||  | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  12195350 ctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttg 12195449  T
Q  334 aataccagggatagtcccaaaccttccaaagcaggattattctttaatggggttactcattggttaacttctcgttatcatggtttaccattggaagtta 433  Q
    ||| ||| || || || |||| |      || ||||| |||||||||||||| || |||||||||  |||||| |||||||    |||||||||||||||    
T  12195450 aatgccacggctaatcgcaaagc------aggaggatcattctttaatggggctattcattggttggcttctccttatcataaaataccattggaagtta 12195543  T
Q  434 ttgttgcctttg 445  Q
    |||||| |||||    
T  12195544 ttgttgtctttg 12195555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 34 - 445
Target Start/End: Original strand, 12439578 - 12439983
Alignment:
Q  34 tatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacnnnnnnntacctt 133  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||  ||||||||||||||||||||||||| ||||||       ||   |    
T  12439578 tatgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaataaaat 12439677  T
Q  134 tgtctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtc 233  Q
    |||||||||||| ||  || || | | |||   ||| || ||||||    ||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  12439678 tgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgacggattaagagatgattacttggtcgttttattgtc 12439777  T
Q  234 cctttgtccatcctttatgaaaacttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttatttt 333  Q
    |  |  |||| ||||  |||||||||||||  | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  12439778 ctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttg 12439877  T
Q  334 aataccagggatagtcccaaaccttccaaagcaggattattctttaatggggttactcattggttaacttctcgttatcatggtttaccattggaagtta 433  Q
    ||| ||| || || || |||| |      || ||||| |||||||||||||| || |||||||||  |||||| |||||||    |||||||||||||||    
T  12439878 aatgccacggctaatcgcaaagc------aggaggatcattctttaatggggctattcattggttggcttctccttatcataaaataccattggaagtta 12439971  T
Q  434 ttgttgcctttg 445  Q
    |||||| |||||    
T  12439972 ttgttgtctttg 12439983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 50669044 - 50669105
Alignment:
Q  173 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  50669044 atcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcc 50669105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 7908325 - 7908375
Alignment:
Q  184 ggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcc 7908375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 7237806 - 7237753
Alignment:
Q  182 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 235  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggttgtattttccc 7237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 50251010 - 50250820
Alignment:
Q  36 tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacnnnnnnntacctttg 135  Q
    |||||||||||||||||| ||||| |||||||| || |||||||   |||   ||||| |||||||||||||| |  || |||||       ||||||||    
T  50251010 tgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttg 50250911  T
Q  136 tctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    |||| ||||||||  || ||| | | ||  |||    |||||||||||||||||||||||||||  |||| ||||||||| ||||||||||    
T  50250910 tctcattttgattccaaattaaagaaatatcattccaatcatctatatggttttggttatgaccactcaacagatgattatttggtggttt 50250820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 7877727 - 7877779
Alignment:
Q  182 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcc 7877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  182 atggttttggttatgaccggtcaagagatgattacttggtggtt 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  182 atggttttggttatgaccggtcaagagatgattacttggtggtt 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 7813469 - 7813528
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 235  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7813469 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7813528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 7822958 - 7823017
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 235  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  7822958 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 7823017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 37827073 - 37827024
Alignment:
Q  177 tctatatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggttgttt 37827024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 7773900 - 7773848
Alignment:
Q  182 atggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    |||||||||||||||||| |  |||||||||||||||||||||| ||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcc 7773848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 7765607 - 7765665
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7765607 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 7786429 - 7786487
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  7786429 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 7786487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 48852658 - 48852716
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    |||||||||||||||| ||||||| |||||  |||||||||||||| |||||| |||||    
T  48852658 atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcc 48852716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 49048662 - 49048605
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtc 233  Q
    |||||||||||||||| |||||||  |||| ||||||||| ||||||||| |||||||    
T  49048662 atctatatggttttgggtatgacccatcaacagatgattatttggtggttgtattgtc 49048605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 7800629 - 7800685
Alignment:
Q  179 tatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 235  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| |||| ||||    
T  7800629 tatatggttttggttatgaccagtcaagagatgagtacgtgctggttgtattttccc 7800685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 45372289 - 45372251
Alignment:
Q  36 tgaaattaaaggttcatgcagagggtttatattcttgca 74  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  45372289 tgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 48170651 - 48170601
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    |||||||||||||||| ||||| | || ||||||||||||||| |||||||    
T  48170651 atctatatggttttgggtatgatcagttaagagatgattacttagtggttt 48170601  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 48147801 - 48147756
Alignment:
Q  181 tatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 48898701 - 48898754
Alignment:
Q  181 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 234  Q
    ||||||||||| ||||| | || || |||||||||||| |||||||||||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcc 48898754  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 7877581 - 7877653
Alignment:
Q  36 tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcc 108  Q
    |||||||| |||||||||||||||||||||| | ||| |||||    |||  |||||| ||||||||||||||    
T  7877581 tgaaattagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatcc 7877653  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 49044277 - 49044225
Alignment:
Q  175 catctatatggttttggttatgaccggtcaagagatgattacttggtggtttt 227  Q
    ||||||||| ||||||| ||||| | ||||| ||||||||| |||||||||||    
T  49044277 catctatattgttttgggtatgatccgtcaacagatgattatttggtggtttt 49044225  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 49048580 - 49048508
Alignment:
Q  258 ttcatcaaagttggaatttttctcattgagagataaaaagtggaatgaaattgaaggtcctcacatcacttat 330  Q
    ||||||| | ||||| |||||||| ||||||||||| |  ||||| |||||||| ||| |||||||| |||||    
T  49048580 ttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 48883790 - 48883843
Alignment:
Q  173 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48883790 atcatctatatggttttggttatgacccgtcaagagatgattacatggtggttt 48883843  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 21979727 - 21979678
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggtt 225  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 21015801 - 21015849
Alignment:
Q  176 atctatatggttttggttatgaccggtcaagagatgattacttggtggt 224  Q
    |||||||||||||||| |||||||  |||| ||||||||| ||||||||    
T  21015801 atctatatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 11006041 - 11005994
Alignment:
Q  177 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 224  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 11024616 - 11024569
Alignment:
Q  177 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 224  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 24310168 - 24310215
Alignment:
Q  181 tatggttttggttatgaccggtcaagagatgattacttggtggtttta 228  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagtttta 24310215  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 24367144 - 24367189
Alignment:
Q  181 tatggttttggttatgaccggtcaagagatgattacttggtggttt 226  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggttt 24367189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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