View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661_low_6 (Length: 434)
Name: NF9661_low_6
Description: NF9661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 30888159 - 30888582
Alignment:
| Q |
1 |
atcacaatgaattaccaaaattcacgataaacaacaattgaatttatcaaatcaccacagttttattatttatannnnnnnnagatagatggaataacaa |
100 |
Q |
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||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
30888159 |
atcacaatgaactatcaaaattcacgataaacaacaattaaatttatcaaatcaccatagttttattatttatattttttttagatagatgaaataacaa |
30888258 |
T |
|
| Q |
101 |
tagtgatnnnnnnnnctcaaacaaaatggttttaaaatttttgtagaagttgtgcacattatttcttctttttatcatacaaaatggactactatttctc |
200 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888259 |
tagtgataaaaaaaactcaaacaaaatggttttaaaacttttgtagaagttgtgcacattatttcttctttttatcatacaaaatggactactatttctc |
30888358 |
T |
|
| Q |
201 |
ttcattctcgtatcattgtcttaaccatcttaattcttctgtgattcgtatcataaaaatagacatttcaacaaccatatcccatgtataaatcatttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888359 |
ttcattctcgtatcattgtcttaaccatcttaattcttctgtgattcgtatcataaaaatagacatttcaacaaccatatcccatgtataaatcatttat |
30888458 |
T |
|
| Q |
301 |
acattttgtctaattattattataataattgacatccatcaaccaatgataagaaatcgtacaaccatgccgacatcaaatgaataaaacatcacctctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888459 |
acattttgtctaattattattataataattgacatccatcaaccaatgataagaaatcgtacaaccatgccgacatcaaatgaataaaacatcacctctt |
30888558 |
T |
|
| Q |
401 |
ctttgccacaagatctgatgtcca |
424 |
Q |
| |
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|||||||||||||| | ||||||| |
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| T |
30888559 |
ctttgccacaagatttcatgtcca |
30888582 |
T |
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