View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9662_5 (Length: 310)
Name: NF9662_5
Description: NF9662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9662_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 5441245 - 5440950
Alignment:
| Q |
15 |
aaccgtatacataagaaactattggaattgactcttggcaagaaaaaccaagacctgtcttttctagacagtgtaaatggtgattctaatgagagcaaga |
114 |
Q |
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| T |
5441245 |
aaccgtatacataagaaactattggaattgactcttggcaagagaaaccaagacctttcttttctagacagtgtaaatggtgcttctaatgagagcaaga |
5441146 |
T |
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| Q |
115 |
taaagggttatatagaggaacactcatgtttagagaagaatggagagaatgtcagtgcttcattcaagaatttatacaccatagtacaggttgttaatgt |
214 |
Q |
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| T |
5441145 |
taaagggttatatagaggaacactcatgtttagagaagaatggagagaatgtcagtgcttcattcaagaatttatacaccatagtacaggttgttaatgt |
5441046 |
T |
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| Q |
215 |
cgacgaatgaaaatattttaaatagtataaattaatcctatttatattcaactaacattagtgcannnnnnnagtcggtgcagcgaggtgaagaac |
310 |
Q |
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| T |
5441045 |
cgacgaataaaaatattttaaatagtataaattaatcctatttatattcaactaacattagtgcatttttttagtcggtgcagcgaggtgaagaac |
5440950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 3856603 - 3856873
Alignment:
| Q |
7 |
gtgagaagaaccgtatacataagaaactattggaattgactcttggcaagaaaaaccaagacctgtcttttctagacagtgtaaatggtgattctaatga |
106 |
Q |
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| T |
3856603 |
gtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataaatggcgtttctgatga |
3856702 |
T |
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| Q |
107 |
gagcaagataaagggttatatagaggaacactcatgtttagagaagaatggagagaat--gtc-agtgcttcattcaagaatttatacaccatagtacag |
203 |
Q |
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| T |
3856703 |
gaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacag |
3856802 |
T |
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| Q |
204 |
gttgttaatgtcgacgaatgaaaatattttaaatagtataaattaatcctatttatattcaactaacatta |
274 |
Q |
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| T |
3856803 |
gttgttgatggtgatgaataaaaatattttaaatagcatgaagttatcttatttatattcaactaacatta |
3856873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 3865360 - 3865630
Alignment:
| Q |
7 |
gtgagaagaaccgtatacataagaaactattggaattgactcttggcaagaaaaaccaagacctgtcttttctagacagtgtaaatggtgattctaatga |
106 |
Q |
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| T |
3865360 |
gtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataaatggcgtttctgatga |
3865459 |
T |
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| Q |
107 |
gagcaagataaagggttatatagaggaacactcatgtttagagaagaatggagagaat--gtc-agtgcttcattcaagaatttatacaccatagtacag |
203 |
Q |
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| T |
3865460 |
gaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacaccataatacag |
3865559 |
T |
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| Q |
204 |
gttgttaatgtcgacgaatgaaaatattttaaatagtataaattaatcctatttatattcaactaacatta |
274 |
Q |
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| T |
3865560 |
gttgttgatggtgatgaataaaaatattttaaatagcatgaagttatcttatttatattcaactaacatta |
3865630 |
T |
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