View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9662_low_1 (Length: 334)
Name: NF9662_low_1
Description: NF9662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9662_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34431336 - 34431019
Alignment:
| Q |
1 |
ctaacacaggacatgacactgacacgttaacatcgataataattttaaaaaattacaaatgcatatacaaaaagaatttaatcgcatgtgttaatgtgtg |
100 |
Q |
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| T |
34431336 |
ctaacacaggacatgacactgacacgttaacatcgataataattttaaaaaatgacatatgcatatacaaaaagaatttaatcgcatgtgttaatgtgtg |
34431237 |
T |
|
| Q |
101 |
tcggtgtcagacactgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttttgttatttcat |
200 |
Q |
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| T |
34431236 |
tcggtgtcagacaccgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttttgttatttcat |
34431137 |
T |
|
| Q |
201 |
catcaacatttgtaaattttgttattattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacattttgagcttatagt |
300 |
Q |
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| T |
34431136 |
catcaacatttgtaaattttgttattattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacatcttgagcttatagt |
34431037 |
T |
|
| Q |
301 |
ggatagattgtagcttgt |
318 |
Q |
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| T |
34431036 |
ggatagattgtagcttgt |
34431019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 34431596 - 34431524
Alignment:
| Q |
225 |
ttattactttttagatgaatgttgtttttgtttagttagggttctgtttggtgaggatacattttgagcttat |
297 |
Q |
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| T |
34431596 |
ttattagttattagattaatattgtttttgtttagttagggtcctgtttggtgaggttaaatttggagcttat |
34431524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29519175 - 29519219
Alignment:
| Q |
9 |
ggacatgacactgacacgttaacatcgataataattttaaaaaat |
53 |
Q |
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| T |
29519175 |
ggacatgacactgacacgtcaacaccgataataattttaaaaaat |
29519219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 15454224 - 15454260
Alignment:
| Q |
17 |
cactgacacgttaacatcgataataattttaaaaaat |
53 |
Q |
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| T |
15454224 |
cactgacacgtcaacgtcgataataattttaaaaaat |
15454260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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