View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9662_low_2 (Length: 248)
Name: NF9662_low_2
Description: NF9662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9662_low_2 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 2269138 - 2269002
Alignment:
| Q |
19 |
cagagaccatgaagaaagtttttctttattacttgttttccccaacctgaaattgtaactgcaattattagaatgaatttttagcaaatactaaaagcaa |
118 |
Q |
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| T |
2269138 |
cagagaccatgaagaaagcttttctttattacttgttttccccaacctgaaataataactgcaattattagaatgaatttttagcaaatattaaaagcaa |
2269039 |
T |
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| Q |
119 |
atatggaaaagcatctatttatactagttttagaaat |
155 |
Q |
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| T |
2269038 |
atatggaaaagcatccatttatactagttttagaaat |
2269002 |
T |
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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 12287267 - 12287371
Alignment:
| Q |
19 |
cagagaccatgaagaaagtttttctttattacttgttttccccaacctgaaattgtaactgcaattattagaatgaatttttagcaaatactaaaagcaa |
118 |
Q |
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| T |
12287267 |
cagagacaatgtagaaagcttttctttattacttgttttccccaacctgaaataataaccacaattattagaatgaaattttagcaaatattcaaagcaa |
12287366 |
T |
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| Q |
119 |
atatg |
123 |
Q |
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| T |
12287367 |
atatg |
12287371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 32091905 - 32091815
Alignment:
| Q |
31 |
agaaagtttttctttattacttgttttccccaacctgaaattgtaactgcaattattagaatgaatttttagcaaatactaaaagcaaata |
121 |
Q |
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| T |
32091905 |
agaaagcttttctttttaacttgttttccccaatctgaaacaataaccgcagttattagaataaatttttagcaaatattgaaagcaaata |
32091815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 9392046 - 9392138
Alignment:
| Q |
31 |
agaaagtttttctttattacttgttttccccaacctgaaattgtaactgcaattattagaatgaatttttagcaaatactaaaagcaaatatg |
123 |
Q |
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| T |
9392046 |
agaaagattttctttagtacttgtttttcccaacctgaaataataaccgcagttattagaatgaatttttagcaaatattaaaagcaaatatg |
9392138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 13468 - 13409
Alignment:
| Q |
49 |
acttgttttccccaacctgaaattgtaactgcaattattagaatgaatttttagcaaata |
108 |
Q |
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| T |
13468 |
acttgttttccccaacctgaaataatgactgcagttattagtatgaatttttagcaaata |
13409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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