View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_high_4 (Length: 342)
Name: NF9663_high_4
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 918691 - 919001
Alignment:
| Q |
18 |
aaaacagacccatatgtgtgtggtcttcagtcaaggaatggagatagtatacatttttgaagaaagaatcatatttcatacaaaacattgttaatattca |
117 |
Q |
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| T |
918691 |
aaaacagacccatatgtgcg--gtcttcagtcaatgaatggagatagtatacatgtttgaagaaagaatcatatttcatacaaaacattgttaatattca |
918788 |
T |
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| Q |
118 |
ctgaatctttgcaaaattaaggtagaattagggtagtgataccctttatataaaatttgtttaatattgtaatttattttaaaatgtgacatggttgatg |
217 |
Q |
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| T |
918789 |
ctgaatctttgcaaaattaaggtagaattagggtagtgataccctttatataaaatttgtttaatattgtaatttattttaaaatgtgacatggttgatg |
918888 |
T |
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| Q |
218 |
agggtgtatatactcaacaaaactacatgaatattattgtgttcgctttatataaattaattggttcctgacattcatatattaagttccttaataaatg |
317 |
Q |
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| T |
918889 |
agggtg--tatactcaacaaaactacatgaatattattgtgttcgctttatataaattaattggttcctgacattcatatattaagttccttaataaatg |
918986 |
T |
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| Q |
318 |
atctatatacagaat |
332 |
Q |
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| T |
918987 |
atctatatacagaat |
919001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 54541956 - 54542000
Alignment:
| Q |
158 |
accctttatataaaatttgtttaatattgtaatttattttaaaat |
202 |
Q |
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| T |
54541956 |
accctttaagtaaaatttgtttaatatttgaatttattttaaaat |
54542000 |
T |
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