View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9663_low_1 (Length: 701)

Name: NF9663_low_1
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9663_low_1
NF9663_low_1
[»] chr3 (4 HSPs)
chr3 (20-683)||(40146475-40147137)
chr3 (20-502)||(8103025-8103509)
chr3 (20-185)||(40409466-40409631)
chr3 (538-679)||(8102812-8102953)
[»] chr4 (7 HSPs)
chr4 (35-505)||(7637613-7638085)
chr4 (270-537)||(7655475-7655742)
chr4 (37-505)||(7629167-7629637)
chr4 (35-505)||(7615778-7616250)
chr4 (55-510)||(7606777-7607234)
chr4 (568-606)||(39082796-39082834)
chr4 (567-643)||(7629008-7629084)
[»] chr7 (3 HSPs)
chr7 (35-537)||(8935202-8935706)
chr7 (35-430)||(8934261-8934655)
chr7 (224-361)||(8929994-8930131)
[»] chr6 (3 HSPs)
chr6 (55-504)||(6501058-6501505)
chr6 (249-409)||(11969553-11969713)
chr6 (534-592)||(11969370-11969428)


Alignment Details
Target: chr3 (Bit Score: 632; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Original strand, 40146475 - 40147137
Alignment:
Q  20 catcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40146475 catcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatc 40146574  T
Q  120 acaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  40146575 acaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgctgcggcagagaa-cacttgtgtaggtgacatacttg 40146673  T
Q  220 gatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40146674 gatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagctgtgcaagtgac 40146773  T
Q  320 agagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40146774 agagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcg 40146873  T
Q  420 cgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcac 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40146874 cgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagccac 40146973  T
Q  520 aaaagaatgactctgatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacat 619  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40146974 aaaagaatgactctgatgataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacat 40147073  T
Q  620 ggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147074 ggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg 40147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 8103509 - 8103025
Alignment:
Q  20 catcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatc 119  Q
    |||||||||| | |||||||||||| ||| || ||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| |    
T  8103509 catcctctagagtcaaaccaaattccacagctaaaacaatctctatcatctactcttgcttttttcccactacttgcaggccgtctagaaataacagacc 8103410  T
Q  120 acaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttg 219  Q
    |  | ||||||||| | || ||||| ||||| ||||||||||| || |  ||||||||||||||  |  | ||| |||||||||||||||||||||||||    
T  8103409 atgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactgag-aacacttgtgtaggtgacatacttg 8103311  T
Q  220 gatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgac 319  Q
    ||||||||||  ||||||||||  || ||||||||| |||| | | | || | ||||| |||||||||||||||||||||||||| |  |||||||||||    
T  8103310 gatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcacaaccattgtttgccgtgcaagtgac 8103211  T
Q  320 agagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcg 419  Q
    |||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| |||   ||  |||||  ||||||||| || |||||  |||||||     
T  8103210 agagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtatttcattaattcgtgggctgaaatctca 8103111  T
Q  420 c---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcc 502  Q
    |   |||||||||||||||||  ||||||||||  ||| || |||||||||||||||  ||||||||||  |||||||||||||||    
T  8103110 cgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 40409466 - 40409631
Alignment:
Q  20 catcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||| |    
T  40409466 catcctctagtgccaaaccaaattcaacatctgaaacactctctatcctctgcccttgcctttttcccaccacttgcaggccgtctagagagaacagacc 40409565  T
Q  120 acaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccg 185  Q
    | || ||||||||| |||| ||||  |||||||||||||||||||| ||||||||||| |||||||    
T  40409566 ataaagacaacaccatttcgtgttgtgtcacatgcaacaatgcaggtgcgctctttgtgcatgccg 40409631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 538 - 679
Target Start/End: Complemental strand, 8102953 - 8102812
Alignment:
Q  538 ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa 637  Q
    ||||||||||| ||||  ||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || |  ||||| |||||    
T  8102953 ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa 8102854  T
Q  638 aatatcatccctccaatcactttttacacatctttggcgctc 679  Q
    |||||| ||||| ||| |||||||| |||| |||||| ||||    
T  8102853 aatatcttcccttcaagcactttttgcacacctttggtgctc 8102812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 35 - 505
Target Start/End: Complemental strand, 7638085 - 7637613
Alignment:
Q  35 aaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccg 134  Q
    |||||||| ||||  |||| ||||||||| || ||  ||||||||||||||| ||| ||||| ||||||||  ||||||| || ||||  |||||||| |    
T  7638085 aaccaaatccaacggctgagacactctctgtcctcagcccttgcctttttccaacctcttgccggccgtctcaaaataacggaacacagagacaacactg 7637986  T
Q  135 tttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttc 234  Q
    |||| |||||||| | ||||||||||||||| |  ||||||||||||||||| |||||| || |||||||| |  ||||| || | |  ||||||||| |    
T  7637985 tttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcagag-aatacttgtgttgcagacatcctagaacccacctacgtac 7637887  T
Q  235 ctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacgg 334  Q
    |||| || || |||| ||| ||| | ||| ||  ||| | ||  || |||||||||||| |||||||||| |  || ||||| || ||| ||||||||||    
T  7637886 ctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacgg 7637787  T
Q  335 cttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca- 432  Q
      | ||||||||||   ||||||||||||  || ||||||||| |||||   |||| |||||| || || |||||  ||||||| ||| ||||||| ||     
T  7637786 tattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcat 7637687  T
Q  433 -atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 505  Q
     ||||| |||| |||| |  ||| ||||| ||||||||||||| |||| ||||||  || ||||||||||||||    
T  7637686 catcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcctatacgatttccttt 7637613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 537
Target Start/End: Original strand, 7655475 - 7655742
Alignment:
Q  270 gttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttg 369  Q
    |||| ||| ||||||||||||||| |||||||||| | ||| ||||| || ||| ||||||||||| |||||||||| ||||  || |||||||  || |    
T  7655475 gttagaaactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtag 7655574  T
Q  370 ttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtt 469  Q
     ||||||| ||||||| |||| |||||| || || |||||  |||| || |||||||||    ||||| |||| ||   |  |||||| || ||||||||    
T  7655575 ctgacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtt 7655674  T
Q  470 tccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg 537  Q
    ||||| ||| |||||||  || |||||||||||||| ||||||||| ||||||||||| |||||||||    
T  7655675 tccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg 7655742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 37 - 505
Target Start/End: Complemental strand, 7629637 - 7629167
Alignment:
Q  37 ccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtt 136  Q
    |||||| ||||  |||| |||||||||||| ||| ||||| ||||||| | ||| ||||| |||||||| |||||||| || ||||||||||| || ||     
T  7629637 ccaaatccaacggctgagacactctctatcctctgccctttccttttttcaacctcttgctggccgtcttgaaataacggaacacaaggacaatactgtc 7629538  T
Q  137 tcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcct 236  Q
    || ||||| || | ||||||||||||||| |  |||||| |||| || || || ||| || |||||||| | |||||| || | |     |||||| |||    
T  7629537 tcgtgttctgttatatgcaacaatgcaggtgtactctttatccacgctgcagccgag-aatacttgtgttgctgacatcctagaaccggtctacgtacct 7629439  T
Q  237 cccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggct 336  Q
    |  || ||||||||| | ||| | || |   ||| |||||  ||||||||||| ||| |||||||||| | ||| ||||| || ||| ||||||||||      
T  7629438 caaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtg 7629339  T
Q  337 tcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--a 433  Q
    |||| |||||||  ||||| |||||||  |||||||||||| |||||   |||| |||||| || ||||||||  ||||||| ||| ||||||| ||  |    
T  7629338 tctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatca 7629239  T
Q  434 tcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 505  Q
    |||| |||| ||||    |||    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7629238 tcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaacttcccatacgatttccttt 7629167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 505
Target Start/End: Complemental strand, 7616250 - 7615778
Alignment:
Q  35 aaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccg 134  Q
    |||||||| ||||  |||| ||||||| | || ||| ||||||||||||||| ||| ||| | ||||||||  ||||||| || ||||| ||||||||||    
T  7616250 aaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccg 7616151  T
Q  135 tttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttc 234  Q
    | || ||||| || | ||||||||||||||| |  |||||| ||||||| || || ||| || |||||||| | |||||| || | |   ||||| || |    
T  7616150 tctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgag-aatacttgtgttgctgacatcctagaacctacctatgtac 7616052  T
Q  235 ctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacgg 334  Q
    |||| || || |||||||||||  | |||||| | ||| |||  ||||||||||| ||| |||| ||||| |  || ||||| || ||| ||||||||||    
T  7616051 ctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacgg 7615952  T
Q  335 cttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca- 432  Q
      | || |||||||   | || |||||||  || ||||||||||||||    |||| |||||| || ||||||||  |||| || ||| ||||||| ||     
T  7615951 tatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcat 7615852  T
Q  433 -atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 505  Q
     ||||| |||| |||| |  ||| ||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  7615851 catcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttccttt 7615778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 510
Target Start/End: Complemental strand, 7607234 - 7606777
Alignment:
Q  55 acactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgc 154  Q
    |||||||||||| ||| ||||| ||||||||| ||| ||||| ||||| || |||||||| || || |  |||||||  || ||||||||||| | ||||    
T  7607234 acactctctatcctctgccctttcctttttccaacctcttgccggccgccttgaaataacggaacatagagacaacattgtctcatgttccgttatatgc 7607135  T
Q  155 aacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattt 254  Q
    || |||||||| |  |||||| |||| || |  ||||||||  | | |||| | |||||| || | |     |||||| ||||  || ||||||||||||    
T  7607134 aataatgcaggtgtactctttatccacgctgtagcagagaat-attcgtgttgctgacatcctggaaccggtctacgtacctctaattgtcgattcattt 7607036  T
Q  255 tttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacat 354  Q
    ||| | || | | ||| |||||| || |||||||| ||| |||||||||| | ||| ||| | || ||| ||||||||||  | ||||||||||   | |    
T  7607035 tttgccttcatcggagataaaaactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctcct 7606936  T
Q  355 ttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgca---atcaagtatccaaactcat 451  Q
    | |||||||  || ||||||||| |||||   |||| |||||| || ||||||||  |||| || || ||||||||     ||||| ||||||||| |      
T  7606935 tcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaaccccc 7606836  T
Q  452 aacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta 510  Q
    ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  7606835 aacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcacta 7606777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 606
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
Q  568 tattccatttcacaaaggagaaaatcgctcaactgaaat 606  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  39082834 tattccatttcacaaaggagaaaatcgcggaactgaaat 39082796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 643
Target Start/End: Complemental strand, 7629084 - 7629008
Alignment:
Q  567 ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatc 643  Q
    |||||||| || ||||||||||||||||  ||||||||||  |||  |||||  |||||||||| || |||||||||    
T  7629084 ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatc 7629008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 537
Target Start/End: Original strand, 8935202 - 8935706
Alignment:
Q  35 aaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccg 134  Q
    |||||||| ||||  |||| ||||||||||||||| |||||||||||||||| ||| ||||| ||||||||  ||||||| ||  || | ||||| || |    
T  8935202 aaccaaatccaacggctgagacactctctatcttcaacccttgcctttttccaacctcttgccggccgtctcaaaataacggaataccaagacaaaactg 8935301  T
Q  135 tttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttc 234  Q
    | || || ||||| | ||||||||||||||| |  |||||||||||||||    ||||| || |||||||| | |||||| || | |  ||||||||| |    
T  8935302 tctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatcagag-aatacttgtgttgctgacattctagaacccacctacgtac 8935400  T
Q  235 ctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacgg 334  Q
    | || || || |||||||||||| | ||||||   |||| ||  ||||||||||||||| |||||||||| |  || ||||| || |||||| |||||||    
T  8935401 caccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacgg 8935500  T
Q  335 cttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca- 432  Q
      | ||||||||||   |||||||||| || ||  |||||||| ||||    |||| |||||| || || |||||  ||||||| ||| ||||||| ||     
T  8935501 tattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcat 8935600  T
Q  433 -atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgact 531  Q
     ||||| |||| ||||    ||| |||||||||||||||||   |||| ||||||  || |||||||||||||| ||| | |||  |||||||||| |||    
T  8935601 catcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcact 8935700  T
Q  532 ctgatg 537  Q
    ||||||    
T  8935701 ctgatg 8935706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 430
Target Start/End: Original strand, 8934261 - 8934655
Alignment:
Q  35 aaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccg 134  Q
    |||||||| ||||| || | ||||||||||||||| |||||||||||||||| ||| ||||  || |||||  ||||||| ||  || | ||||| || |    
T  8934261 aaccaaatccaacagctaagacactctctatcttcaacccttgcctttttccaacctcttgtcggtcgtctcaaaataacggaataccaagacaaaactg 8934360  T
Q  135 tttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttc 234  Q
    | || || ||||| | ||||||||||||||  |  |||||||||||||||    |||||||  |||||||| | |||||| || | |  ||||||||| |    
T  8934361 tctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatcagagaat-acttgtgttgctgacattctagaacccacctacgtac 8934459  T
Q  235 ctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacgg 334  Q
    |||| || || |||||||||||| | |||||| | |||| ||  ||||||||||||||| |||||||||| |  || ||||| || |||||| |||||||    
T  8934460 ctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacgg 8934559  T
Q  335 cttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg 430  Q
      | ||||||||||   |||||||||| || ||  |||||||| ||||    |||| |||||| || ||||||||  ||||||| ||| |||||||    
T  8934560 tattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttg 8934655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 361
Target Start/End: Original strand, 8929994 - 8930131
Alignment:
Q  224 cacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagag 323  Q
    ||||||||| ||||| || || |||||||||||| | |||||| | |||| ||  ||||||| ||||||| |||||||||| |   | ||||| || |||    
T  8929994 cacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccattgttggcatttcaagtaactgag 8930093  T
Q  324 ttagttgacggcttcttcattggttttacatttaacca 361  Q
    ||| |||||||  | ||||||||||   ||||||||||    
T  8930094 ttaattgacggtattttcattggttgctcatttaacca 8930131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 55 - 504
Target Start/End: Complemental strand, 6501505 - 6501058
Alignment:
Q  55 acactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgc 154  Q
    ||||||| |||| |||  |||||||||||||| ||||||||| ||||||||  |||| || ||  || | |||||||  |||||||||||| ||||||||    
T  6501505 acactctttatcctctgtccttgcctttttccaaccacttgcgggccgtctcaaaatgacggaaaacgaagacaacaatgtttcatgttccatcacatgc 6501406  T
Q  155 aacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattt 254  Q
    ||||||||||| |  ||||||||||| || ||   ||||  ||||  |||  | ||||||  |||||  ||||||| ||||||  |||||| ||||||||    
T  6501405 aacaatgcaggtgtactctttgtccacgctgcaatagag-gacacacgtgatgttgacatcgttggacccacctaccttcctcttatcgtccattcattt 6501307  T
Q  255 tttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacat 354  Q
    ||||| || | | | | || ||| |||||||||| |||| |||||||| | |  |||||||||||||||||||||| |||  |||| ||||| |||| ||    
T  6501306 tttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagat 6501207  T
Q  355 ttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataac 454  Q
    | ||||||| |||   ||  ||| ||||||  |||| ||| || |  || |||||  |||| || ||||||||||| |||||| |||||||||||  | |    
T  6501206 tcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttgtaatcaaatatccaaactcccatc 6501107  T
Q  455 gctagaacgttggtttccaagtggtattcaacatcccatacgatttcctt 504  Q
     |||||||||| |||||||| || |||||| | | |||||||||||||||    
T  6501106 actagaacgtt-gtttccaaatgatattcagcgttccatacgatttcctt 6501058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 409
Target Start/End: Complemental strand, 11969713 - 11969553
Alignment:
Q  249 tcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtt 348  Q
    |||||||||||| | | | |||||| ||| || ||||| |||||| | |||||| | |  || ||||| |||||||||||||| ||| |||||||||| |    
T  11969713 tcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggct 11969614  T
Q  349 ttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggc 409  Q
    ||||| | || ||||  |  |||||||||| |||||| |||| |||||| || ||||||||    
T  11969613 ttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggc 11969553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 592
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
Q  534 gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat 592  Q
    ||||| || |||||| ||||| || |||||||||||||||||||||||||| |||||||    
T  11969428 gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat 11969370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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