View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_13 (Length: 335)
Name: NF9663_low_13
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_13 |
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| [»] scaffold0007 (5 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 112 - 320
Target Start/End: Complemental strand, 35056 - 34845
Alignment:
| Q |
112 |
ttagaatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcata----attatctttttaaagagctacctagtaatgggagtgctcttgagtt |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35056 |
ttagaatcaaaccatatacaagtcttagaaaagaaaaaaaa-ggttcatatataaatatctttttaaagagctacctagtaatgggagtgctcttgagtt |
34958 |
T |
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| Q |
208 |
gacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatctaaggaa |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34957 |
gacacaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtgggaaactcgagactctcacatcctgaataatcgaattcatctaaggaa |
34858 |
T |
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| Q |
308 |
gccacattgatag |
320 |
Q |
| |
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|||||||||||| |
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| T |
34857 |
tccacattgatag |
34845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 112 - 320
Target Start/End: Complemental strand, 40369 - 40158
Alignment:
| Q |
112 |
ttagaatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcata----attatctttttaaagagctacctagtaatgggagtgctcttgagtt |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40369 |
ttagaatcaaaccatatacaagtcttagaaaagaaaaaaaa-ggttcatatataaatatctttttaaagagctacctagtaatgggagtgctcttgagtt |
40271 |
T |
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| Q |
208 |
gacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatctaaggaa |
307 |
Q |
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| T |
40270 |
gacacaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtgggaaactcgagactctcacatcctgaataatcgaattcatctaaggaa |
40171 |
T |
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| Q |
308 |
gccacattgatag |
320 |
Q |
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|||||||||||| |
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| T |
40170 |
tccacattgatag |
40158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 105 - 320
Target Start/End: Complemental strand, 70897 - 70677
Alignment:
| Q |
105 |
ataataattagaatcaaaccatatacaagtcttagaaaagnnnnnnnnn-ggttcata----attatctttttaaagagctacctagtaatgggagtgct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
70897 |
ataataattagaatcaaaccatatacaagtcttagaaaagaaaaaaaaaaggttcatatataattatctttttaaagagctacctagtaatgggagtgct |
70798 |
T |
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| Q |
200 |
cttgagttgacagaatgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcat |
299 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| ||| || ||| |||| |
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| T |
70797 |
cttgagttgacagaatgaaatggtataaactgcattaatctcttccatcagtcagaggtggtaaacttgacactctcacatcctgaatgatagaactcat |
70698 |
T |
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| Q |
300 |
ctaaggaagccacattgatag |
320 |
Q |
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||||||||||||||||||||| |
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| T |
70697 |
ctaaggaagccacattgatag |
70677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 35101 - 35055
Alignment:
| Q |
12 |
agagacctgcaagatatagtatatctccggtagaatccaactttttt |
58 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35101 |
agagacctgcaagatatagtatatctccagtagaatccaactttttt |
35055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40414 - 40368
Alignment:
| Q |
12 |
agagacctgcaagatatagtatatctccggtagaatccaactttttt |
58 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40414 |
agagacctgcaagatatagtatatctccagtagaatccaactttttt |
40368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 320
Target Start/End: Complemental strand, 28906287 - 28906082
Alignment:
| Q |
116 |
aatcaaaccatatacaagtcttagaaaagnnnnnnnnnggttcataattatctttttaaagagct-acctagtaatgggagtgctcttgagttgacagaa |
214 |
Q |
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|||||||||| |||||| ||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
28906287 |
aatcaaaccaaatacaaatcttagaaaagaaaaaaaaaggttcataattaccttttcaaagagcttacctagtaatgggagtggtcttgagttgacagaa |
28906188 |
T |
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| Q |
215 |
tgaaatggtgtaaactgcattaatctcttccatcagtcagaggtggtaaactcgagactcccacatccccaataatcgaattcatctaaggaagccacat |
314 |
Q |
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|||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||| |||| |||| | |
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| T |
28906187 |
tgaagcggagtaaactgcattaatatcttccatcagtcagaggtggaaaactcgagactctcacatcctgaatgatcgaattcatctagggaatccacgt |
28906088 |
T |
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| Q |
315 |
tgatag |
320 |
Q |
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|||||| |
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| T |
28906087 |
tgatag |
28906082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 28906434 - 28906365
Alignment:
| Q |
12 |
agagacctgcaagatatagtatatctccggtagaatccaacttttttcagttccagtccagcacaaactt |
81 |
Q |
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||||||||||| |||||||||||||||| |||||||| ||| |||||||| |||||||| |||||||||| |
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| T |
28906434 |
agagacctgcatgatatagtatatctcctgtagaatcgaacctttttcagatccagtccggcacaaactt |
28906365 |
T |
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