View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9663_low_17 (Length: 333)
Name: NF9663_low_17
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 2431249 - 2431034
Alignment:
| Q |
36 |
caacaagcaaaactttatttgttaatttgcataaagctacagccacatgttctttgttcgaagcatcaagaaggctgtcaacaagaaagtctagacctac |
135 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2431249 |
caacaagcaaaaatttatttgttaatttgcataaagctacagccacatgttctttgttcgaagcatcaagaaggctgtaaacaagaaagtctagacctac |
2431150 |
T |
|
| Q |
136 |
atataaaataaaataattaatgcatgtgtagttaaacaaatatacttgtattgtactacagcaaacatggccnnnnnnnncctctaaaggtataggtcac |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2431149 |
atatataataaaataattaatgcatgtgtagttaaacaaatatacttgtattgtactacagcaaacatggccttttttttcctctaaaggtataggtcac |
2431050 |
T |
|
| Q |
236 |
agattaacctgtccat |
251 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2431049 |
agattaacctgtccat |
2431034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 2430992 - 2430964
Alignment:
| Q |
291 |
tttggtcaccccaaggtctatttctctgc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2430992 |
tttggtcaccccaaggtctatttctctgc |
2430964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University