View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_2 (Length: 492)
Name: NF9663_low_2
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 48483189 - 48482731
Alignment:
| Q |
21 |
ctaggaactaatttgcatgcttgttttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcat |
120 |
Q |
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| T |
48483189 |
ctaggaactaatttgcatgcttgttttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcat |
48483090 |
T |
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| Q |
121 |
tccattccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactc |
220 |
Q |
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| T |
48483089 |
tccattccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactc |
48482990 |
T |
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| Q |
221 |
acattcatttttcctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctac |
320 |
Q |
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| T |
48482989 |
acattcattttttctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctac |
48482890 |
T |
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| Q |
321 |
atattttcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctg |
420 |
Q |
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| T |
48482889 |
atattttcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctg |
48482790 |
T |
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| Q |
421 |
ctactttttcttctgaatttgctcnnnnnnnggagggcagcaaagtcattgatgtccat |
479 |
Q |
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| T |
48482789 |
ctactttttcttctgaatttgctctttttttggagggcagcaaagtcatttatgtccat |
48482731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
| Q |
259 |
cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
347 |
Q |
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||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||| || ||||| |||||||| |
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| T |
10037573 |
cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
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