View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9663_low_22 (Length: 250)

Name: NF9663_low_22
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9663_low_22
NF9663_low_22
[»] chr4 (4 HSPs)
chr4 (155-240)||(11644654-11644739)
chr4 (1-66)||(11593226-11593291)
chr4 (1-66)||(11644828-11644893)
chr4 (171-240)||(11593404-11593469)
[»] chr1 (1 HSPs)
chr1 (1-66)||(34705154-34705219)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 11644739 - 11644654
Alignment:
Q  155 aggattgtgttgtggtaagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttatttgttgagtcctatg 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11644739 aggattgtgttgtggtaagaatgaagagtgtaacaaagttgtttgtgttgtgccgagttgttcggttttatttgttgagttctatg 11644654  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11593226 - 11593291
Alignment:
Q  1 ttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593226 ttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca 11593291  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11644893 - 11644828
Alignment:
Q  1 ttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11644893 ttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca 11644828  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 11593404 - 11593469
Alignment:
Q  171 aagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttatttgttgagtcctatg 240  Q
    |||||||| |||||||||||   ||||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  11593404 aagaatgatgagtgtaacaa---tgtttgtgttgtgccgaattgtttggtttta-ttgttgagttctatg 11593469  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34705154 - 34705219
Alignment:
Q  1 ttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca 66  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||  ||||||||||||| ||||||||    
T  34705154 ttggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaatgttcatca 34705219  T

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