View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_23 (Length: 247)
Name: NF9663_low_23
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 32270620 - 32270508
Alignment:
| Q |
106 |
gagattctttccactttttaaagttgtccctttgtgttgaaacttcttttttaatcattcaagatcaagtacttcttctttttcaaacctttgtttttaa |
205 |
Q |
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| T |
32270620 |
gagactctttccacttcttaaagttgtccctttgtgttgaaacttcttttttaatcattcaagatcaagtacttcttctttttcaatcctttgcttttaa |
32270521 |
T |
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| Q |
206 |
ttattgaatagtt |
218 |
Q |
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| T |
32270520 |
ttattgaatagtt |
32270508 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 32270674 - 32270618
Alignment:
| Q |
20 |
agctgtatgattttgaaagagcaaatttgcaaagaaacaaagataaagtgttatgag |
76 |
Q |
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| T |
32270674 |
agctgtatgattttgaaagagcaaatatgcaaagaaacaaagataaagtgttatgag |
32270618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 12887699 - 12887759
Alignment:
| Q |
92 |
aaatggaaaacatagagattctttccactttttaaagttgtccctttgtgttgaaacttctt |
153 |
Q |
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| T |
12887699 |
aaatggaaaacatagagattctttcaacttattaaagttgt-cttttgtgttggaacttctt |
12887759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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