View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_26 (Length: 232)
Name: NF9663_low_26
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 43947002 - 43947230
Alignment:
| Q |
1 |
tggcctcacgcgttctgtgcttcaaagaatccatcatcagtggaataccaatgagttggtgaagctcaaatttcacgagcaacttgttcagaatatgaat |
100 |
Q |
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| T |
43947002 |
tggcctcacgcgttctgtgcttcaaagaatccatcatcagtggaataccaatgagttggtgaagctcaaatttcaccagcaacttgttcagaatatgaat |
43947101 |
T |
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| Q |
101 |
cttgctcataaaatcgtgcaggttgctttctacctttcttccttgttatcgcaatcaatcaatgctatatat-aataattcctttacattaatattcatg |
199 |
Q |
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| T |
43947102 |
cttgctcataacatcgtgcaggttgctttctacctttcttcctttttatcgcaatcaatcaatgctatatataaataattcttttacattaatattcatg |
43947201 |
T |
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| Q |
200 |
ctatgctgcacaccatatctctgcttctc |
228 |
Q |
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| T |
43947202 |
ctatgctgcacaccatatctatgcctctc |
43947230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 11533788 - 11533698
Alignment:
| Q |
26 |
agaatccatcatcagtggaataccaatgagttggtgaagctcaaatttcacgagcaacttgttcagaatatgaatcttgctcataaaatcg |
116 |
Q |
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| T |
11533788 |
agaatccatcatcagtggaatatcaatgagttggtgaagcttaaatttcacgagcaacttgttcagaatataaatattgcttataacatcg |
11533698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 23525352 - 23525460
Alignment:
| Q |
24 |
aaagaatccatcatcagtggaataccaatgagttggtgaagctcaaatttcacgagcaacttgttcagaatatgaatcttgctcataaaatcgtgcaggt |
123 |
Q |
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| T |
23525352 |
aaagaatccattatcagtggaataccaatgagttggtgaagcttaaa------------cttgttcagaatatgaatattgcttataacatcgtgcaagt |
23525439 |
T |
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| Q |
124 |
tgctttctacctttcttcctt |
144 |
Q |
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||||||||||||||||||||| |
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| T |
23525440 |
tgctttctacctttcttcctt |
23525460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 23525529 - 23525578
Alignment:
| Q |
146 |
ttatcgcaatcaatcaatgctatatataataattcctttacattaatatt |
195 |
Q |
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| T |
23525529 |
ttatcgcaatcaatcaatgctatatataataattcctttacattactatt |
23525578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 97633 - 97718
Alignment:
| Q |
26 |
agaatccatcatcagtggaataccaatgagttggtgaagctcaaatttcacgagcaacttgttcagaatatgaatcttgctcataa |
111 |
Q |
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||||||||||||||| |||||| ||||||||| ||||| || ||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
97633 |
agaatccatcatcagaggaatatcaatgagttagtgaatcttaaatttcacgagcaacttgttcagaatataaatattgcttataa |
97718 |
T |
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