View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9663_low_30 (Length: 221)

Name: NF9663_low_30
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9663_low_30
NF9663_low_30
[»] chr2 (3 HSPs)
chr2 (41-200)||(8036547-8036706)
chr2 (42-180)||(19161868-19162004)
chr2 (48-133)||(9685545-9685630)
[»] chr1 (5 HSPs)
chr1 (48-193)||(34644458-34644601)
chr1 (49-193)||(2764372-2764514)
chr1 (47-163)||(31737425-31737538)
chr1 (68-126)||(4611101-4611159)
chr1 (48-104)||(5453987-5454043)
[»] chr3 (4 HSPs)
chr3 (67-163)||(52411993-52412087)
chr3 (48-160)||(26772650-26772760)
chr3 (69-181)||(38145969-38146079)
chr3 (48-133)||(4669793-4669878)
[»] chr4 (8 HSPs)
chr4 (48-193)||(4419156-4419298)
chr4 (48-163)||(50001028-50001141)
chr4 (48-163)||(3329888-3330001)
chr4 (48-163)||(39001289-39001402)
chr4 (42-163)||(23255599-23255718)
chr4 (42-163)||(55933562-55933681)
chr4 (69-133)||(23242813-23242877)
chr4 (48-163)||(53619478-53619591)
[»] chr8 (3 HSPs)
chr8 (48-163)||(39434559-39434672)
chr8 (48-163)||(38815186-38815299)
chr8 (48-163)||(37514113-37514226)
[»] chr7 (3 HSPs)
chr7 (47-166)||(21326937-21327054)
chr7 (56-137)||(32584500-32584581)
chr7 (70-193)||(40726552-40726673)
[»] chr5 (7 HSPs)
chr5 (56-163)||(2566197-2566302)
chr5 (70-126)||(34335251-34335307)
chr5 (56-137)||(23023495-23023576)
chr5 (48-163)||(13167012-13167125)
chr5 (68-193)||(25663104-25663227)
chr5 (42-138)||(27336581-27336677)
chr5 (49-133)||(42921591-42921674)
[»] chr6 (2 HSPs)
chr6 (48-163)||(17249407-17249520)
chr6 (69-192)||(13398255-13398376)
[»] scaffold0148 (1 HSPs)
scaffold0148 (48-163)||(33142-33255)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 8036706 - 8036547
Alignment:
Q  41 cagcgaacaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatg 140  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  8036706 cagcgaacaacaatctgcgccgctatgcttttttgaatgacaaaatcaatcattgtaaagacaatatctacggacctaggagacatgacattgatatatg 8036607  T
Q  141 cataaacctttgaactctatgtaaaatataagcaacctctgatgttacgaagcaaaaaat 200  Q
    ||||||||||||||||||||||||||  | | ||||||||||||||||||||| ||||||    
T  8036606 cataaacctttgaactctatgtaaaaggtcaacaacctctgatgttacgaagccaaaaat 8036547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 19162004 - 19161868
Alignment:
Q  42 agcgaacaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgc 141  Q
    |||| ||| ||| ||||||| ||| | |||||||| |||||||||||||| | | ||| ||| |||  || || ||||||||||| ||||||  ||||||    
T  19162004 agcggacagcaagctgcgccactacgtctttttggatgacaaaatcaatcctcgaaaacacactattcattgacctaggagacatgacattg--atatgc 19161907  T
Q  142 ataaacctttgaactctatgtaaaatataagcaacctct 180  Q
    || | | ||||||||||||||||||  |||||| |||||    
T  19161906 atgaccttttgaactctatgtaaaaggtaagcagcctct 19161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 9685630 - 9685545
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattg 133  Q
    |||||| |||||||||||  ||||||||| || ||||| ||||| |||| || |||| ||  ||||| ||||||||||| ||||||    
T  9685630 caacaagctgcgccgctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctaggagacatgacattg 9685545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 34644458 - 34644601
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  | ||||||| || ||||||||||||| ||||| |||| ||  ||||| ||||||||||||||||||  |||||||||| |    
T  34644458 caacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacataacattg--atatgcataacc 34644555  T
Q  148 ctttgaactctatgtaaaatataagcaacctctgatgttacgaagc 193  Q
    ||||| |||||||||| ||  | | |||||||||||| || |||||    
T  34644556 ctttggactctatgtagaaggtcaacaacctctgatgctaggaagc 34644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 2764372 - 2764514
Alignment:
Q  49 aacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacc 148  Q
    ||||| |||||||||||  ||||||||| ||  |||||||||||| ||||| |||| || |||||| ||| ||||||||||||||  || ||||||| ||    
T  2764372 aacaagctgcgccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacattg--atttgcataaccc 2764469  T
Q  149 tttgaactctatgtaaaatataagcaacctctgatgttacgaagc 193  Q
    |||| ||| |||||| ||  | | |||||||||||| || |||||    
T  2764470 tttggactttatgtagaaggtcaacaacctctgatgctaggaagc 2764514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 31737538 - 31737425
Alignment:
Q  47 acaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaa 146  Q
    ||||||| ||||||||| | |||||||||| || ||||||||||| | ||||| || | ||  |||||||||||| |||||||||||  |||||||| |     
T  31737538 acaacaagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaacacta-attcatggatctaggaaacataacattg--atatgcatgac 31737442  T
Q  147 cctttgaactctatgta 163  Q
    | |||||||||||||||    
T  31737441 cttttgaactctatgta 31737425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 4611101 - 4611159
Alignment:
Q  68 cctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacat 126  Q
    ||||||||| |||||||||||||||| || || |||||||  ||||| |||||||||||    
T  4611101 cctttttggatgacaaaatcaatcatcgtgaacacaatattcatggacctaggagacat 4611159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 5453987 - 5454043
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaa 104  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||| ||||||| ||||    
T  5453987 caacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaa 5454043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 52412087 - 52411993
Alignment:
Q  67 gcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaactctatgta 163  Q
    |||||||||| || ||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||   ||||||| | |||||||||||||||||    
T  52412087 gcctttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatgacattg--ttatgcatgaccctttgaactctatgta 52411993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 26772650 - 26772760
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| || ||||||||||| | ||||| |||| ||  ||||| ||||||||||||||||||   ||||||||| |    
T  26772650 caacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctaggagacataacattg--ttatgcataatc 26772747  T
Q  148 ctttgaactctat 160  Q
    ||||| |||||||    
T  26772748 ctttgtactctat 26772760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 38145969 - 38146079
Alignment:
Q  69 ctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaactctatgtaaaata 168  Q
    |||||| | |||||||||||||||| ||||| ||||  |  ||||| ||||||||||| ||||||   ||||||| | ||||||||||||| ||| |||     
T  38145969 ctttttagatgacaaaatcaatcatcgtaaacacaacgttcatggacctaggagacatgacattg--ttatgcatgaccctttgaactctaagtagaatg 38146066  T
Q  169 taagcaacctctg 181  Q
    ||| |||||||||    
T  38146067 taaacaacctctg 38146079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 4669878 - 4669793
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattg 133  Q
    |||||| ||||||||| |  ||||||||| | |||||||||||||| ||||| |||| ||  ||||| | ||||||||| ||||||    
T  4669878 caacaagctgcgccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatgacattg 4669793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 4419156 - 4419298
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| ||||||||||| |  ||||||| || ||||| ||||||| ||||| |||| ||  ||||| |||||||||||||||||| |||  |||||| |    
T  4419156 caacaagctgcgccgcta-gattttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagacataacattgttat--gcataacc 4419252  T
Q  148 ctttgaactctatgtaaaatataagcaacctctgatgttacgaagc 193  Q
    |||||||||||||||| ||  | | |||||||||||| ||||||||    
T  4419253 ctttgaactctatgtagaaggtcaacaacctctgatgctacgaagc 4419298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 50001141 - 50001028
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||   |||||||| || ||||||||||| | ||||| |||| || |||||||||||||||||||||||||   ||||||||| |    
T  50001141 caacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatctaggagacataacattg--ctatgcataacc 50001044  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||| ||||||    
T  50001043 ctttggactatatgta 50001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 3329888 - 3330001
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| || ||||| ||||||| ||||| |||  ||  ||||| ||||||||||||||||||   ||||||||| |    
T  3329888 caacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctaggagacataacattg--ctatgcataacc 3329985  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||||||||||    
T  3329986 ctttggactctatgta 3330001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 39001289 - 39001402
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||| | ||||| |||| ||  ||||| |||||||||| |||||||   ||||||||| |    
T  39001289 caacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctaggagacacaacattg--ttatgcataatc 39001386  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||||||||||    
T  39001387 ctttggactctatgta 39001402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 23255599 - 23255718
Alignment:
Q  42 agcgaacaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgc 141  Q
    |||| ||||||| |||||||||||  | ||| ||| || ||||||||||| | ||||| |||||||  |||||  |||||||||||||||||   |||||    
T  23255599 agcggacaacaagctgcgccgctagacttttctggatggcaaaatcaatcctcgtaaacacaatattcatggacttaggagacataacattg--ttatgc 23255696  T
Q  142 ataaacctttgaactctatgta 163  Q
    |||| |||||| ||||||||||    
T  23255697 ataaccctttggactctatgta 23255718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 55933681 - 55933562
Alignment:
Q  42 agcgaacaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgc 141  Q
    |||| ||||||| ||||| |||||  | ||||||| || ||||||||||||| ||||| |||| ||  | ||| ||||||||||||| ||||   ||||     
T  55933681 agcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctaggagacataatattg--ttatgt 55933584  T
Q  142 ataaacctttgaactctatgta 163  Q
    |||| |||||| ||||||||||    
T  55933583 ataaccctttggactctatgta 55933562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 23242813 - 23242877
Alignment:
Q  69 ctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattg 133  Q
    |||||||| | |||||||||||||| ||||| ||||||| |||||| ||| |||| || ||||||    
T  23242813 ctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatgacattg 23242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 53619478 - 53619591
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| || ||||| ||||  | ||||| |||| ||  ||||| ||| ||||||||||||||   ||||||||| |    
T  53619478 caacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaagagacataacattg--ttatgcataacc 53619575  T
Q  148 ctttgaactctatgta 163  Q
    ||||  ||||||||||    
T  53619576 ctttagactctatgta 53619591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 39434559 - 39434672
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| || ||||||||||| | ||||| |||| ||  ||||||||| ||||||| ||||||  |||||||||| |    
T  39434559 caacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggatctaagagacattacattg--atatgcataacc 39434656  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||||||||||    
T  39434657 ctttggactctatgta 39434672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 38815186 - 38815299
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| ||||||||||| |||||||||| ||  |||| ||||| | ||||| |||| ||  ||||| ||||||||||| ||||||   ||||||| | |    
T  38815186 caacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattg--ctatgcatgacc 38815283  T
Q  148 ctttgaactctatgta 163  Q
    ||||||||||||||||    
T  38815284 ctttgaactctatgta 38815299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 37514113 - 37514226
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||| ||  |||||||||||| ||| ||||||| | || || |||| ||  ||||| ||| ||||| ||||||||  |||||||| | |    
T  37514113 caacaagctgcgccgttagacctttttgggtggcaagatcaatcctcgtgaatacaacattcatggacctaagagacgtaacattg--atatgcatgacc 37514210  T
Q  148 ctttgaactctatgta 163  Q
     |||||||||||||||    
T  37514211 ttttgaactctatgta 37514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 21327054 - 21326937
Alignment:
Q  47 acaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaa 146  Q
    ||||||| |||||||| ||  ||||||||| || ||||||||||| | || || |||| ||  ||||| ||||||||||||||||||   ||||||| |     
T  21327054 acaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctaggagacataacattg--ctatgcatgac 21326957  T
Q  147 cctttgaactctatgtaaaa 166  Q
    | ||||||||||||||||||    
T  21326956 cttttgaactctatgtaaaa 21326937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 32584500 - 32584581
Alignment:
Q  56 tgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatat 137  Q
    ||||| |||| |||||||||| ||  |||||||||| ||||||| |||| ||  || |||||| ||||||||||||||||||    
T  32584500 tgcgctgctaggcctttttggatggtaaaatcaatctttgtaaacacaacattcatcgatctatgagacataacattgatat 32584581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 40726673 - 40726552
Alignment:
Q  70 tttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaactctatgtaaaatat 169  Q
    ||||||| || ||||||||||| |  |||| |||| ||  |||||||||||||||||| |||||   ||||||||| |||||| |||||||||| ||  |    
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctaggagacatagcattg--ttatgcataaccctttggactctatgtagaaggt 40726576  T
Q  170 aagcaacctctgatgttacgaagc 193  Q
     | |||||||||||| || |||||    
T  40726575 caacaacctctgatgctatgaagc 40726552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 2566302 - 2566197
Alignment:
Q  56 tgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaac 155  Q
    ||||||||||  ||||||||| || ||||||||||| | ||||| |||| ||  ||||||||||||||||| ||||||   ||||||| | | |||||||    
T  2566302 tgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggagacatgacattg--ctatgcatgaccttttgaac 2566205  T
Q  156 tctatgta 163  Q
    ||||||||    
T  2566204 tctatgta 2566197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 34335251 - 34335307
Alignment:
Q  70 tttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacat 126  Q
    ||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  34335251 tttttaggtgacaaaatcaatcatcgtaaacacaatatttatgggtctaggagacat 34335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 23023495 - 23023576
Alignment:
Q  56 tgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatat 137  Q
    |||||| ||| |||||||||| |||||||||||||| | ||||| |||| ||  || || ||||||||||| ||||||||||    
T  23023495 tgcgcccctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctaggagacatgacattgatat 23023576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 13167125 - 13167012
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||   |||||||| | ||| |||||||||| |||||  ||| ||  ||||| |||||||||||| |||||   ||||||||| |    
T  13167125 caacaagctgcgccgctagatctttttggataacagaatcaatcatcgtaaacccaacattcatggacctaggagacataccattg--ctatgcataacc 13167028  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||||||||||    
T  13167027 ctttggactctatgta 13167012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 25663227 - 25663104
Alignment:
Q  68 cctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaactctatgtaaaat 167  Q
    ||||||||| |||||||  ||||| | |||||  ||| ||  ||||| ||||| ||||||||||||  |||||||||| |||||| |||||||||| ||     
T  25663227 cctttttggatgacaaagccaatcctcgtaaactcaacattcatggacctaggggacataacattg--atatgcataaccctttggactctatgtagaag 25663130  T
Q  168 ataagcaacctctgatgttacgaagc 193  Q
    || | |||| ||||||| || |||||    
T  25663129 atcaacaacttctgatgctaggaagc 25663104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 27336581 - 27336677
Alignment:
Q  42 agcgaacaacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatata 138  Q
    |||| |||| || |||| ||||||  ||||||| | || ||||||||||| ||||||| |||| ||  |||||  ||||||||||||||||| ||||    
T  27336581 agcggacaataaactgcaccgctagaccttttttgatggcaaaatcaatccttgtaaaaacaacattcatggacttaggagacataacattgctata 27336677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 42921591 - 42921674
Alignment:
Q  49 aacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattg 133  Q
    ||||| |||||||||||   |||||||| || ||||| ||||| ||||||| ||||||| ||||||  |||||||||| ||||||    
T  42921591 aacaagctgcgccgctagatctttttggatggcaaaaccaatccttgtaaacacaatat-tatggacttaggagacatgacattg 42921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 17249520 - 17249407
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||||||||||  ||||||||| || ||||| ||||| | ||||| |||| ||  ||| |  ||||||||||||||||| ||||  ||||| |    
T  17249520 caacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatgaacttaggagacataacattgctata--cataatc 17249423  T
Q  148 ctttgaactctatgta 163  Q
    ||||| ||||||||||    
T  17249422 ctttggactctatgta 17249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 13398376 - 13398255
Alignment:
Q  69 ctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaacctttgaactctatgtaaaata 168  Q
    |||||||| |||||||||||| ||| ||||| |||| || |||| |||||| || | | ||||||   ||||||| | | ||||||||||||||| |||     
T  13398376 ctttttggatgacaaaatcaaccatcgtaaacacaacatttatgcatctagaagtcgtgacattg--ttatgcatcatcttttgaactctatgtagaatg 13398279  T
Q  169 taagcaacctctgatgttacgaag 192  Q
    | | |||| |||||||||| ||||    
T  13398278 tcaacaacttctgatgttaggaag 13398255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 33142 - 33255
Alignment:
Q  48 caacaatctgcgccgctatgcctttttgggtgacaaaatcaatcattgtaaagacaatatctatggatctaggagacataacattgatatatgcataaac 147  Q
    |||||| |||| |||| | |||||||||| |||||||||||||| | ||||| || |  |  ||||| ||||||||||||| ||||   ||||||| | |    
T  33142 caacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctaggagacataaaattg--ctatgcatgacc 33239  T
Q  148 ctttgaactctatgta 163  Q
     |||||||||||||||    
T  33240 ttttgaactctatgta 33255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University