View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9663_low_37 (Length: 201)

Name: NF9663_low_37
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9663_low_37
NF9663_low_37
[»] chr5 (5 HSPs)
chr5 (18-187)||(19434811-19434980)
chr5 (56-98)||(15439493-15439534)
chr5 (56-100)||(6513330-6513373)
chr5 (56-100)||(11849318-11849362)
chr5 (54-98)||(37728555-37728599)
[»] chr7 (3 HSPs)
chr7 (54-100)||(21691615-21691661)
chr7 (56-98)||(9761886-9761925)
chr7 (56-100)||(13138846-13138889)
[»] chr2 (4 HSPs)
chr2 (56-102)||(12264350-12264396)
chr2 (55-99)||(10899373-10899417)
chr2 (56-98)||(24415831-24415873)
chr2 (54-98)||(20319521-20319564)
[»] chr1 (2 HSPs)
chr1 (57-101)||(34487567-34487610)
chr1 (56-98)||(20110781-20110823)
[»] chr6 (4 HSPs)
chr6 (58-100)||(11704496-11704537)
chr6 (54-98)||(14101358-14101400)
chr6 (56-101)||(19687928-19687972)
chr6 (56-96)||(12347282-12347322)
[»] chr3 (3 HSPs)
chr3 (56-98)||(13076293-13076335)
chr3 (56-101)||(8875042-8875086)
chr3 (56-99)||(53057644-53057685)
[»] scaffold0340 (1 HSPs)
scaffold0340 (57-98)||(17240-17280)
[»] chr8 (3 HSPs)
chr8 (56-97)||(3503520-3503560)
chr8 (49-98)||(22167852-22167900)
chr8 (56-101)||(28888443-28888488)
[»] chr4 (1 HSPs)
chr4 (56-101)||(16631631-16631675)
[»] scaffold0011 (1 HSPs)
scaffold0011 (56-100)||(145319-145363)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 19434980 - 19434811
Alignment:
Q  18 aactctgaccatctttttcgcattgtcgtggttaagtctgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggtcgcatttcgattcact 117  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||    
T  19434980 aactttgaccacctttttcgcattgtcgtggttaagtctgaaggtgagaaaaacacaagaaagagaggtttgaattgtgttggtcgcatttcaattctct 19434881  T
Q  118 ttgtagatagtagaaaatagatagcagcggaaataaaagagataaaggataggaaacaacacaaagtatt 187  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19434880 ttgtagatactagaaaatagatagcagcggaaataaaagagataaaggataggaaacaacacaaaatatt 19434811  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 15439493 - 15439534
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  15439493 tgaaggtgagaaaaacacaagaaat-gggggttgaattgtgtt 15439534  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 6513373 - 6513330
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||    
T  6513373 tgaaggtgagaaaaacacaagaaggagggg-ttgaattgtgttgg 6513330  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 11849362 - 11849318
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    ||||||| ||||||||||||||||  |||| ||||||||||||||    
T  11849362 tgaaggtaagaaaaacacaagaaagtgggggttgaattgtgttgg 11849318  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 37728555 - 37728599
Alignment:
Q  54 tctgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    |||||||||||||||||||||||||   |||| ||||||||||||    
T  37728555 tctgaaggtgagaaaaacacaagaaggggggggttgaattgtgtt 37728599  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 21691615 - 21691661
Alignment:
Q  54 tctgaaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||    
T  21691615 tctgaaggtgagaaaaacacaagaaagggggggttgaattgtgttgg 21691661  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 9761886 - 9761925
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  9761886 tgaaggtgagaaaaacacaaga---aggggtttgaattgtgtt 9761925  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 13138889 - 13138846
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
T  13138889 tgaaggtgagaaaaacacaag-aagagggggttgaattgtgttgg 13138846  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 12264350 - 12264396
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggtc 102  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||    
T  12264350 tgaaggtgagaaaaacacaacaaataaaggtttgaattgtgttggtc 12264396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 10899417 - 10899373
Alignment:
Q  55 ctgaaggtgagaaaaacacaagaaataggggtttgaattgtgttg 99  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||    
T  10899417 ctgaaggtgggaaaaacacaagaaatggggggttgaattgtgttg 10899373  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 24415873 - 24415831
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||||  |||| ||||||||||||    
T  24415873 tgaaggtgagaaaaacacaagaaagggggggttgaattgtgtt 24415831  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 20319564 - 20319521
Alignment:
Q  54 tctgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||    
T  20319564 tctgaaggtgagaaaaacacaag-aagagggggttgaattgtgtt 20319521  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 34487567 - 34487610
Alignment:
Q  57 gaaggtgagaaaaacacaagaaataggggtttgaattgtgttggt 101  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  34487567 gaaggtgagaaaaacacaagaaataaggg-ttgaattgtgttggt 34487610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 20110823 - 20110781
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||||  |||| ||||||||||||    
T  20110823 tgaaggtgagaaaaacacaagaaagggggggttgaattgtgtt 20110781  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 11704496 - 11704537
Alignment:
Q  58 aaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  11704496 aaggtgagaaaaacacaagaagtagggg-ttgaattgtgttgg 11704537  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 14101400 - 14101358
Alignment:
Q  54 tctgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||    
T  14101400 tctgaaggtgagaaaaacacaagaa--agggggttgaattgtgtt 14101358  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 19687928 - 19687972
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggt 101  Q
    ||||||||||||||||||||| || ||||| |||||||||||||||    
T  19687928 tgaaggtgagaaaaacacaag-aagagggggttgaattgtgttggt 19687972  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 12347282 - 12347322
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtg 96  Q
    |||||||||||||||||||||||  ||||| ||||||||||    
T  12347282 tgaaggtgagaaaaacacaagaatgagggggttgaattgtg 12347322  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 13076293 - 13076335
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||||  |||| ||||||||||||    
T  13076293 tgaaggtgagaaaaacacaagaaagggggggttgaattgtgtt 13076335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 8875086 - 8875042
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggt 101  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  8875086 tgaaggtgagaaaaacacaagaaggagggg-ttgaattgtgttggt 8875042  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 53057685 - 53057644
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttg 99  Q
    |||||||||||||||||||||||  ||||| |||||||||||||    
T  53057685 tgaaggtgagaaaaacacaagaa--agggggttgaattgtgttg 53057644  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 17240 - 17280
Alignment:
Q  57 gaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  17240 gaaggtgagaaaaacacaagaaa-atgggtttgaattgtgtt 17280  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 3503560 - 3503520
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgt 97  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  3503560 tgaaggtgagaaaaacacaagaaa-atgggtttgaattgtgt 3503520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 22167900 - 22167852
Alignment:
Q  49 ttaagtctgaaggtgagaaaaacacaagaaataggggtttgaattgtgtt 98  Q
    |||||| ||||||||||||||||||||| ||  |||||||||||||||||    
T  22167900 ttaagtttgaaggtgagaaaaacacaag-aaggggggtttgaattgtgtt 22167852  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 28888443 - 28888488
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggt 101  Q
    |||||||||||||||||||||||   |||| |||||||||||||||    
T  28888443 tgaaggtgagaaaaacacaagaagaggggggttgaattgtgttggt 28888488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 16631631 - 16631675
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttggt 101  Q
    ||||||||||||||||||||| || ||||| |||||||||||||||    
T  16631631 tgaaggtgagaaaaacacaag-aagagggggttgaattgtgttggt 16631675  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 145363 - 145319
Alignment:
Q  56 tgaaggtgagaaaaacacaagaaataggggtttgaattgtgttgg 100  Q
    |||||||||||||||||||||||  | ||| ||||||||||||||    
T  145363 tgaaggtgagaaaaacacaagaaggatggggttgaattgtgttgg 145319  T

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