View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_4 (Length: 428)
Name: NF9663_low_4
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 29259320 - 29259618
Alignment:
| Q |
9 |
agaagcataggcaaaagaaaatgtgggaacatcaaatagtagaagttggaaggtcagtactacagtagtacgagcatagcctaatatgtgtaaagtggtc |
108 |
Q |
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| T |
29259320 |
agaagcatgggcaaaagaaaatgtgggaacatcaaattgtagaagttggaaggtcattactacagta---cgagtatagcctaatatgtgtaaagtggtc |
29259416 |
T |
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| Q |
109 |
ccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaaga |
208 |
Q |
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| T |
29259417 |
ccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaaga |
29259516 |
T |
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| Q |
209 |
aacgcatgcatatatttcgtatagaatgaacctttaaaaacagacggcagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgtttt |
308 |
Q |
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| T |
29259517 |
aacgcatgc--atatttcgtatagaatgaacctttaaaaacagacggtagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgtttt |
29259614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 29259673 - 29259717
Alignment:
| Q |
384 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
428 |
Q |
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| T |
29259673 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
29259717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 29261264 - 29261230
Alignment:
| Q |
189 |
caaaaggaagaagaacaagaaacgcatgcatatat |
223 |
Q |
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| T |
29261264 |
caaaagaaagaagaacaagaaacgcatgcatatat |
29261230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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