View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9663_low_6 (Length: 396)
Name: NF9663_low_6
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 34851485 - 34851243
Alignment:
| Q |
58 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctttttcttggggaataattttcttgaccaccatagtagattgaagagctg |
157 |
Q |
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| T |
34851485 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctgtttcttggggaataattttcttgaccaccatagtagattgaagagctg |
34851386 |
T |
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| Q |
158 |
tagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactaggagtagtgcctaaaacgaatccaaaca |
257 |
Q |
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| T |
34851385 |
tagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagatgccatcactaggagtagtgcctaaaacgaatccaaaca |
34851286 |
T |
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| Q |
258 |
taaacattactaaataaatgcagagatatttaaagtagtagtc |
300 |
Q |
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| T |
34851285 |
taaacattactaaataaatgcagagatatttaaagcagtagtc |
34851243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 3652164 - 3652321
Alignment:
| Q |
133 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactagga |
232 |
Q |
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| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtactattagtattcttgttagagatg---tcactatta |
3652260 |
T |
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| Q |
233 |
gtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagt |
293 |
Q |
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| T |
3652261 |
ggagttcctaaaacaaatccaaacagaaacattacttaagaaatacatacatgtttaaagt |
3652321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34851514 - 34851473
Alignment:
| Q |
1 |
aaatttctcaggtacttaaacgagggctgaaaaaggatgaga |
42 |
Q |
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| T |
34851514 |
aaattcctcaggtaattaaacgagggcttaaaaaggatgaga |
34851473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 389
Target Start/End: Complemental strand, 34851203 - 34851175
Alignment:
| Q |
361 |
tttaaaagaattacctgttgctccaagat |
389 |
Q |
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| T |
34851203 |
tttaaaagaattacctgttgctccaagat |
34851175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 31120837 - 31120764
Alignment:
| Q |
121 |
ataattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
191 |
Q |
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| T |
31120837 |
ataattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
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