View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9663_low_7 (Length: 389)
Name: NF9663_low_7
Description: NF9663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9663_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 55691107 - 55690802
Alignment:
| Q |
18 |
agttgtttggtaatcaaaagagaccatatgctgcctaaaaaatatgtaaaaccaaaaactatcagatgcataatctggattagggcaccaaatgtgttat |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55691107 |
agttgtttggtgatcaaaagagaccatatgctgcctaaaaaatatgtaaaaccaaaaactatcagatgcataatctggattagggcaccaaatgtgttat |
55691008 |
T |
|
| Q |
118 |
atgcaggagttctaaaattaaatctcaactactaacatgttttcctctcctaaatatttaactattaatatttccctataaaaacttatatcgatc-nnn |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55691007 |
atgcaggaggtctaaaattaaatctcaactactaacattttttcctctcctaaatatttaactattaatatttccctataaaaacttatatcgatcaaaa |
55690908 |
T |
|
| Q |
217 |
nnnnttgaagcagcaaaatttataaatgcaacccatagaaggcacaaggagtgcacaaaatattcaaacagattcagcctagcaaagccaagaataaccc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
55690907 |
aaaattgaagcagcaaaatttataaatgcaacccatataaggcacaaggagtgcacaaaatattcaaacagattcagcttagc-aatccaagaataaccc |
55690809 |
T |
|
| Q |
317 |
aatgctg |
323 |
Q |
| |
|
||||||| |
|
|
| T |
55690808 |
aatgctg |
55690802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University