View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_high_10 (Length: 253)
Name: NF9664_high_10
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 31654187 - 31653965
Alignment:
| Q |
14 |
agagagagaaacaaatcaaaaaaggaagataagtttgtagttgaattgaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtt |
113 |
Q |
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| T |
31654187 |
agagagagaaacaaatcaaaaa-ggaagataagtttgtagttgaatcaaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtt |
31654089 |
T |
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| Q |
114 |
tagggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccagcatgttattagcgatggttttcgaag |
213 |
Q |
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| T |
31654088 |
tagggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccagcatgttattagcgatggttttcgaag |
31653989 |
T |
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| Q |
214 |
tcctacgttagagtgcttgaattt |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
31653988 |
tcctacgttagagtgcttgaattt |
31653965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 31650704 - 31650482
Alignment:
| Q |
14 |
agagagagaaacaaatcaaaaaaggaagataagtttgtagttgaattgaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtt |
113 |
Q |
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||||||| ||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31650704 |
agagagaaaaacaaaacaaaaa-ggaagatgtgtttgtagttgaatggaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttggtt |
31650606 |
T |
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| Q |
114 |
tagggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccagcatgttattagcgatggttttcgaag |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
31650605 |
taggaatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtccaacatattattagcgacggttttcgaag |
31650506 |
T |
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| Q |
214 |
tcctacgttagagtgcttgaattt |
237 |
Q |
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||| ||| |||||||||||||||| |
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| T |
31650505 |
tcccacgctagagtgcttgaattt |
31650482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 31635545 - 31635434
Alignment:
| Q |
32 |
aaaaaggaagataagtttgtagttgaattgaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtttagggatacgaagagtta |
131 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||||||| ||||| |||||||||||||||| ||||| || ||||||||||||| |||| || |
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| T |
31635545 |
aaaaagaaagatatgtttgtagttgaattgaagaaaaacctgagattgttaatatgagtgatggagttgaggtgtttgggtttagggatacggagagata |
31635446 |
T |
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| Q |
132 |
agataataagaa |
143 |
Q |
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||| |||||||| |
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| T |
31635445 |
agagaataagaa |
31635434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 31643539 - 31643411
Alignment:
| Q |
14 |
agagagagaaacaaatcaaaaaaggaagataagtttgtagttgaattgaagagaaacctgagagtgttactatgagtgatggagttaaggtgatttagtt |
113 |
Q |
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||||||| ||||||| ||||| ||||||| | ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| ||||| || ||| |
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| T |
31643539 |
agagagaaaaacaaagcaaaag-ggaagatgactttgttgttgaattgaagaaaaacctgagagtgttaatatgagtgatggagttgaggtgtttgggtt |
31643441 |
T |
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| Q |
114 |
tagggatacgaagagttaagataataagaa |
143 |
Q |
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| T |
31643440 |
tagggatacggagagataagagaataagaa |
31643411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 31628976 - 31628902
Alignment:
| Q |
110 |
agtttagggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
184 |
Q |
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||||| |||||||| |||||||||| ||| |||||||| |||||||| |||||||||||||||| || ||||||| |
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| T |
31628976 |
agtttcgggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
31628902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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