View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_high_6 (Length: 359)
Name: NF9664_high_6
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 11929900 - 11929570
Alignment:
| Q |
13 |
ggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttcaaagagcattagatgtgaagcttgtagcaaaaaggacggaactccac |
112 |
Q |
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| T |
11929900 |
ggtggtggatttttatcacgtagaaatgaaaacaaatgtgaaaatttattttcaaagagaattagatgtgaagattgtagcaaaaaggacggaactccac |
11929801 |
T |
|
| Q |
113 |
cttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatgaaaaatttggtattgtacctctgagattgttgtgagacatattcat |
212 |
Q |
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| T |
11929800 |
cttcaaattgatttgaattcaaaaatatcgccggattttgaggaagctggaatgaaaaatttggtattgtacctctgagattattgtgagacatattcat |
11929701 |
T |
|
| Q |
213 |
gaataacatatattgtgagttgttccaaatccactctggtacatagtcattaatccctgcatccgaaatatcaagttccaatatggatctttgagtttta |
312 |
Q |
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| T |
11929700 |
gaataacatatattgtgagttgttccaaatcaattctggtacatagtcattaatccctgcatcagaaatatcaagtttcaatagggacctgtgagtttta |
11929601 |
T |
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| Q |
313 |
agccaactaggaaagcttgaacccaacttgc |
343 |
Q |
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| T |
11929600 |
agccaactaggaaagcttgaaaccaacttgc |
11929570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 11832087 - 11832425
Alignment:
| Q |
5 |
agtttggtggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttcaaagagcattagatgtgaagcttgtagcaaaaaggacgg |
104 |
Q |
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| T |
11832087 |
agtttgttggtggtgcttttttatcacataaaaatgaaaacaaatgtgaaaatttattttcggagagcattagatgtgaagcttgtagcaaaaaggacgg |
11832186 |
T |
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| Q |
105 |
aactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatgaaaaatttggtattgtacctctgagattgttgtgagac |
204 |
Q |
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||||||||| || |||||||||||||||||| ||| ||||| | ||||||||| ||| ||| ||||| ||| |||||||| | ||||||||||| ||| |
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| T |
11832187 |
aactccaccctcaaattgatttgaattcaaacatacagccgaactttgaggaaacttatatggaaaatctggaattgtaccgattagattgttgtgcgac |
11832286 |
T |
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| Q |
205 |
atattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaatccctgcatccgaaatatcaagttccaatatggatcttt |
304 |
Q |
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| T |
11832287 |
atattcattaatatcatatgttgtgagttgttccaaaaccattcgggtacgccaccattaagccctgtatcagaaatatcaagtcgcagtatggatcttt |
11832386 |
T |
|
| Q |
305 |
gagttttaagccaactaggaaagcttgaacccaacttgc |
343 |
Q |
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| T |
11832387 |
gtgtttggagccaacttggaaagcttgaacccagcttgc |
11832425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 11851351 - 11851689
Alignment:
| Q |
5 |
agtttggtggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttcaaagagcattagatgtgaagcttgtagcaaaaaggacgg |
104 |
Q |
| |
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|||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||| |||| |||| |||||||||||||||| || |
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| T |
11851351 |
agtttgttgatggtgcatttttatcacataaaaatgaaaacaaatgtgaaaatttatttacggagagcaatagaaatgaaacttgtagcaaaaaggaagg |
11851450 |
T |
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| Q |
105 |
aactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatgaaaaatttggtattgtacctctgagattgttgtgagac |
204 |
Q |
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| T |
11851451 |
aactccaccctcaaattgatttgaattaaaaaatacagccgaaatttgagaaaacttatatggaaaatatggaattgtaccgattagattgttgtgcgac |
11851550 |
T |
|
| Q |
205 |
atattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaatccctgcatccgaaatatcaagttccaatatggatcttt |
304 |
Q |
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| T |
11851551 |
atattcattaatatcatatatagagagttgttccaaaaccattcgggtacgccaccattaagccctgtatcagaaatatcaagtcgcagtatggatcttt |
11851650 |
T |
|
| Q |
305 |
gagttttaagccaactaggaaagcttgaacccaacttgc |
343 |
Q |
| |
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| T |
11851651 |
gtgtttggagccaacttggaaagcttgaacccagcttgc |
11851689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 11964194 - 11963856
Alignment:
| Q |
5 |
agtttggtggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttcaaagagcattagatgtgaagcttgtagcaaaaaggacgg |
104 |
Q |
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|||||| || ||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||| |||||||||||||||| || |
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| T |
11964194 |
agtttgttgttggtgaatttttatcacataaaaatgaaaacaaatgtgaaaatttattttcggagagcataagacgtgaaacttgtagcaaaaaggatgg |
11964095 |
T |
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| Q |
105 |
aactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatgaaaaatttggtattgtacctctgagattgttgtgagac |
204 |
Q |
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||||| ||| || |||||||||||||||||||||| | ||| | ||| | |||||| ||| ||||| ||| |||||||| | ||||||||||| ||| |
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| T |
11964094 |
aactctaccctcaaattgatttgaattcaaaaatacacccgaactttcataaagcttatatggaaaatctggaattgtaccgattagattgttgtgcgac |
11963995 |
T |
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| Q |
205 |
atattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaatccctgcatccgaaatatcaagttccaatatggatcttt |
304 |
Q |
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|||||||| |||| |||| || ||||||||||||| ||| | |||||| ||||||| ||||| ||| ||||||||||||| || |||| |||||| |
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| T |
11963994 |
atattcattaatatcatagcatgcgagttgttccaaaaccatccgggtacaccatcattaagccctgtatcagaaatatcaagttgcactatgtatcttt |
11963895 |
T |
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| Q |
305 |
gagttttaagccaactaggaaagcttgaacccaacttgc |
343 |
Q |
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| || | |||||||| |||||||||||||||||||||| |
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| T |
11963894 |
gtgtctggagccaacttggaaagcttgaacccaacttgc |
11963856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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