View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9664_high_9 (Length: 257)
Name: NF9664_high_9
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25682972 - 25682733
Alignment:
| Q |
1 |
attaatgagaaaaattatatgaatgtaagtttcaatacttgcatatattcatatcatgtagacactgnnnnnnntgaatgaatagtataatatattnnnn |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25682972 |
attaatgagcaaaattaaatgaatgtaagtttcaatacttgcatatattcatatcatgtagacactgaaaaaaatgaatgaatagtataatatattaaaa |
25682873 |
T |
|
| Q |
101 |
nnnntgacaatataaagttacatatatagtctatagacttcaaaagaataagaaataatggtgatatgtattgtattgaaagtgaatttgagtt--tttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25682872 |
aaaatgacaatataaagttacatatatagtctatagacttcaaaagaataagaaataatggtgatatgtattgtattgaaagtgaatttgagtttttttt |
25682773 |
T |
|
| Q |
199 |
gtctctttcaatattatttgtaagtgaactccgatgatat |
238 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25682772 |
gtctctttcaatataatttgtaagtgaactccgatgatat |
25682733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University