View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9664_low_1 (Length: 857)

Name: NF9664_low_1
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9664_low_1
NF9664_low_1
[»] chr1 (2 HSPs)
chr1 (329-840)||(44841915-44842425)
chr1 (9-265)||(44841572-44841849)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 329 - 840
Target Start/End: Original strand, 44841915 - 44842425
Alignment:
Q  329 ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcannnnnnnnnnnnnnnnnnnnnnnnatttattactttatcagccat 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                        |||||||||||||||||||||    
T  44841915 ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcatttctttttctttttttagtttttatttattactttatcagccat 44842014  T
Q  429 taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaaactccttcggatttctaacct 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44842015 taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaaactccttcggatttctaacct 44842114  T
Q  529 ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44842115 ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa 44842214  T
Q  629 cgagtataactgttttttcctctcaaagccaatacttcatcccttgcaacttctgcgatgtcgccaccaacgataagatcccccgtacatcactttcttt 728  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  44842215 cgagtataactgttttttcctctcaaagccaatagttcatcccttgcaacttctgtgatgtcgccaccaacgataag-tccccccgacatcactttcttt 44842313  T
Q  729 ggtagcacttgacgaatgtctttgttcctatcaaagctatttttgatttcatagagtataatgcattctattttataagaataactcaaattaagagata 828  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44842314 ggtagcacttgacgaatgtctttgttcctatcaaagctatttttgatttcatagggtataatgcattctattttataagaataactcaaattaagagata 44842413  T
Q  829 tcattcaaggga 840  Q
    ||||||||||||    
T  44842414 tcattcaaggga 44842425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 44841572 - 44841849
Alignment:
Q  9 acatcatcaagtatatggaaggccttgttccacattcatcagcatcaacctccctcggttccacctcacgatctaagtagcaaaactacaagaagaacac 108  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44841572 acatcatca-gtatatggaaggccttgttccacattcatcggcatcaacctccctcagttccacctcacgatctaagtagcaaaactacaagaagaacac 44841670  T
Q  109 agatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacat----------------------tca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||    
T  44841671 agatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacattgacaggtacacacgcaggaaatca 44841770  T
Q  187 tattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44841771 tattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc 44841849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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