View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9664_low_11 (Length: 400)
Name: NF9664_low_11
Description: NF9664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9664_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 7841699 - 7841316
Alignment:
| Q |
1 |
gattttgtcatttgtggtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctcctaaacggatttggaagataggaccatat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7841699 |
gattttgtcatttgtggtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctcctaaacggatttggaagacaggaccatat |
7841600 |
T |
|
| Q |
101 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7841599 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcaaataatggttctggtggtt |
7841500 |
T |
|
| Q |
201 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7841499 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactatatttattggctgtgaaaggaa |
7841400 |
T |
|
| Q |
301 |
aatatccatttttgaggaagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttg |
384 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7841399 |
aatatccatttttgagggagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttg |
7841316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 7845625 - 7845242
Alignment:
| Q |
1 |
gattttgtcatttgtggtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctcctaaacggatttggaagataggaccatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7845625 |
gattttgtcatttgtggtgaaacattctttgattgcattttggttggaaataataagtgcagggtatgctcctaaacggatttggaagataggaccatat |
7845526 |
T |
|
| Q |
101 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7845525 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtt |
7845426 |
T |
|
| Q |
201 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
7845425 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatataagcactaaaagtatagctagtactgtatttattggttgtgaaaggaa |
7845326 |
T |
|
| Q |
301 |
aatatccatttttgaggaagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttg |
384 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7845325 |
aatatccatttttgagggagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtggttaatttg |
7845242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 7839643 - 7839260
Alignment:
| Q |
1 |
gattttgtcatttgtggtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctcctaaacggatttggaagataggaccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7839643 |
gattttgtcatttgtggtgaaacattgtttgattgcattttggttggaaataataagtgcagggcatgctcctaaacggatttggaagataggaccatat |
7839544 |
T |
|
| Q |
101 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7839543 |
ttgtcagaaaatgaagcaaagtttcttgcaagagagatttattttcctagtagatggagctgacctattaatggtaatgcaaataatggttctggtggtt |
7839444 |
T |
|
| Q |
201 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||||||| |
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| T |
7839443 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatagaagtactaaaagtattgctagtactgtatttattggttgcgaaaggaa |
7839344 |
T |
|
| Q |
301 |
aatatccatttttgaggaagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgggtaatttg |
384 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
7839343 |
aatatccatttttgagggagtatagatgtttcgcatgatttttgataagagagctatcatggtgttcttatagtggttaatttg |
7839260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 3657414 - 3657039
Alignment:
| Q |
1 |
gattttgtcatttgtggtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctcctaaacggatttggaagataggaccatat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
3657414 |
gattttgtcatttgtagtgaaacattctttgattgcttctttgttggaaataataagtgcagggtatgctccaaaatggatttggaagataggaccatat |
3657315 |
T |
|
| Q |
101 |
ttgtcagaaaatgaagcaaagattcttgcaagagggatttgttttcctagtagatggaggtgacctattaaaggtaatgcatataatggttctggtggtt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3657314 |
ttgtctgaaaatgaagcaaagattcttgcaagagggatttggtttcctagtagatggaggtgacctattaaaggtaaggcatatgatggttctggtggtt |
3657215 |
T |
|
| Q |
201 |
tcatacccttgaatttgttactaggttttttgatcttccatatgttgtatagaagcactaaaagtatagctagtactatatttattggctgtgaaaggaa |
300 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| || ||| |||| | ||| |
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| T |
3657214 |
tcatacccttgaatttgttactaggtttttttaccctccatatgttgtatagaagcactaaaagtatagctagtactatagttgctggttgtgtatagaa |
3657115 |
T |
|
| Q |
301 |
aatatccatttttgaggaagtatagatgtttcgcatgatttttgacaagagagctatcatggtgttcttatagtgg |
376 |
Q |
| |
|
| |||||||||||| || |||| |||||| | |||||||||||| |||| | ||||||| || ||||| |||||| |
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|
| T |
3657114 |
attatccatttttgtgggagtaaagatgtgttacatgatttttgagaagataactatcattgttttcttttagtgg |
3657039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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